@article{Aguila2023,
  author = {Ana Lawry Aguila and Alejandra Jayme and Nina Montaña-Brown and Vincent Heuveline and Andre Altmann},
  title = {Multi-view-AE: A Python package for multi-view autoencoder models},
  journal = {Journal of Open Source Software},
  publisher = {The Open Journal},
  year = {2023},
  volume = {8},
  number = {85},
  pages = {5093},
  url = {https://doi.org/10.21105/joss.05093},
  doi = {https://doi.org/10.21105/joss.05093}
}

@article{Zharov2023,
  author = {Yaroslav Zharov and Evelina Ametova and Rebecca Spiecker and Tilo Baumbach and Genoveva Burca and Vincent Heuveline},
  title = {Shot noise reduction in radiographic and tomographic multi-channel imaging with self-supervised deep learning},
  journal = {Optics Express},
  publisher = {Optica Publishing Group},
  year = {2023},
  volume = {31},
  number = {16},
  pages = {26226},
  url = {https://doi.org/10.1364/oe.492221},
  doi = {https://doi.org/10.1364/oe.492221}
}

@article{Gerstner2023,
  author = {Philipp Gerstner and Vincent Heuveline},
  title = {Finite element approximation of dielectrophoretic force driven flow problems},
  journal = {ESAIM: Mathematical Modelling and Numerical Analysis},
  publisher = {EDP Sciences},
  year = {2023},
  volume = {57},
  number = {3},
  pages = {1691--1729},
  url = {https://doi.org/10.1051/m2an/2023031},
  doi = {https://doi.org/10.1051/m2an/2023031}
}

@inproceedings{Meyer2023,
  author = {Joachim Meyer and Aksel Alpay and Sebastian Hack and Holger Fröning and Vincent Heuveline},
  title = {Implementation Techniques for SPMD Kernels on CPUs},
  booktitle = {International Workshop on OpenCL},
  publisher = {ACM},
  year = {2023},
  url = {https://doi.org/10.1145/3585341.3585342},
  doi = {https://doi.org/10.1145/3585341.3585342}
}

@inproceedings{Alpay2023,
  author = {Aksel Alpay and Vincent Heuveline},
  title = {One Pass to Bind Them: The First Single-Pass SYCL Compiler with Unified Code Representation Across Backends},
  booktitle = {International Workshop on OpenCL},
  publisher = {ACM},
  year = {2023},
  url = {https://doi.org/10.1145/3585341.3585351},
  doi = {https://doi.org/10.1145/3585341.3585351}
}

@article{https://doi.org/10.11588/emclpp.2023.2.94947,
  author = {Erozan, Ayse and Lösel, Philipp and Heuveline, Vincent and Weinhardt, Venera},
  title = {ACSeg: Automated 3D Cytoplasm Segmentation in Soft X-Ray Tomography},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  publisher = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2023},
  pages = {Nr. 2: ACSeg: Automated 3D Cytoplasm Segmentation in Soft X--Ray Tomography},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/94947},
  doi = {https://doi.org/10.11588/EMCLPP.2023.2.94947}
}

@article{DominguezValentin2023,
  author = {Mev Dominguez-Valentin and Saskia Haupt and Toni T. Seppälä and Julian R. Sampson and Lone Sunde and Inge Bernstein and Mark A. Jenkins and Christoph Engel and Stefan Aretz and Maartje Nielsen and Gabriel Capella and Francesc Balaguer and Dafydd Gareth Evans and John Burn and Elke Holinski-Feder and Lucio Bertario and Bernardo Bonanni and Annika Lindblom and Zohar Levi and Finlay Macrae and Ingrid Winship and John-Paul Plazzer and Rolf Sijmons and Luigi Laghi and Adriana Della Valle and Karl Heinimann and Tadeusz Dębniak and Robert Fruscio and Francisco Lopez-Koestner and Karin Alvarez-Valenzuela and Lior H. Katz and Ido Laish and Elez Vainer and Carlos Vaccaro and Dirce Maria Carraro and Kevin Monahan and Elizabeth Half and Aine Stakelum and Des Winter and Rory Kennelly and Nathan Gluck and Harsh Sheth and Naim Abu-Freha and Marc Greenblatt and Benedito Mauro Rossi and Mabel Bohorquez and Giulia Martina Cavestro and Leonardo S. Lino-Silva and Karoline Horisberger and Maria Grazia Tibiletti and Ivana do Nascimento and Huw Thomas and Norma Teresa Rossi and Leandro Apolinário da Silva and Attila Zaránd and Juan Ruiz-Bañobre and Vincent Heuveline and Jukka-Pekka Mecklin and Kirsi Pylvänäinen and Laura Renkonen-Sinisalo and Anna Lepistö and Päivi Peltomäki and Christina Therkildsen and Mia Gebauer Madsen and Stefan Kobbelgaard Burgdorf and John L. Hopper and Aung Ko Win and Robert W. Haile and Noralane Lindor and Steven Gallinger and Loïc Le Marchand and Polly A. Newcomb and Jane Figueiredo and Daniel D. Buchanan and Stephen N. Thibodeau and Magnus von Knebel Doeberitz and Markus Loeffler and Nils Rahner and Evelin Schröck and Verena Steinke-Lange and Wolff Schmiegel and Deepak Vangala and Claudia Perne and Robert Hüneburg and Silke Redler and Reinhard Büttner and Jürgen Weitz and Marta Pineda and Nuria Duenas and Joan Brunet Vidal and Leticia Moreira and Ariadna Sánchez and Eivind Hovig and Sigve Nakken and Kate Green and Fiona Lalloo and James Hill and Emma Crosbie and Miriam Mints and Yael Goldberg and Douglas Tjandra and Sanne W. ten Broeke and Revital Kariv and Guy Rosner and Suresh H. Advani and Lidiya Thomas and Pankaj Shah and Mithun Shah and Florencia Neffa and Patricia Esperon and Walter Pavicic and Giovana Tardin Torrezan and Thiago Bassaneze and Claudia Alejandra Martin and Gabriela Moslein and Pål Moller},
  title = {Mortality by age, gene and gender in carriers of pathogenic mismatch repair gene variants receiving surveillance for early cancer diagnosis and treatment: a report from the prospective Lynch syndrome database},
  journal = {eClinicalMedicine},
  publisher = {Elsevier BV},
  year = {2023},
  pages = {101909},
  url = {https://doi.org/10.1016/j.eclinm.2023.101909},
  doi = {https://doi.org/10.1016/j.eclinm.2023.101909}
}

@article{Ahadova2023,
  author = {Aysel Ahadova and Albrecht Stenzinger and Toni Seppälä and Robert Hüneburg and Matthias Kloor and Hendrik Bläker and Jan-Niklas Wittemann and Volker Endris and Leonie Gerling and Veit Bertram and Marie Theres Neumuth and Johannes Witt and Sebastian Graf and Glen Kristiansen and Oliver Hommerding and Saskia Haupt and Alexander Zeilmann and Vincent Heuveline and Daniel Kazdal and Johannes Gebert and Magnus von Knebel Doeberitz and Jukka-Pekka Mecklin and Jacob Nattermann},
  title = {A “two-in-one hit” model of shortcut carcinogenesis in MLH1 Lynch syndrome carriers},
  journal = {Gastroenterology},
  publisher = {Elsevier BV},
  year = {2023},
  url = {https://doi.org/10.1053/j.gastro.2023.03.007},
  doi = {https://doi.org/10.1053/j.gastro.2023.03.007}
}

@article{https://doi.org/10.11588/emclpp.2023.1.94354,
  author = {Schröder, Marco and Machmeier, Stefan and Heuveline, Vincent},
  title = {Vtable hijacking: Object Type Integrity for run-time type information},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  publisher = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2023},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/94354},
  doi = {https://doi.org/10.11588/emclpp.2023.1.94354}
}

@article{Zaunseder2023,
  author = {Elaine Zaunseder and Ulrike Mütze and Sven F. Garbade and Saskia Haupt and Patrik Feyh and Georg F. Hoffmann and Vincent Heuveline and Stefan Kölker},
  title = {Machine Learning Methods Improve Specificity in Newborn Screening for Isovaleric Aciduria},
  journal = {Metabolites},
  publisher = {MDPI AG},
  year = {2023},
  volume = {13},
  number = {2},
  pages = {304},
  url = {https://www.mdpi.com/2218-1989/13/2/304},
  doi = {https://doi.org/10.3390/metabo13020304}
}

@article{Schrter2023,
  author = {Julian Schröter and Tal Dattner and Jennifer Hüllein and Alejandra Jayme and Vincent Heuveline and Georg F. Hoffmann and Stefan Kölker and Dominic Lenz and Thomas Opladen and Bernt Popp and Christian P. Schaaf and Christian Staufner and Steffen Syrbe and Sebastian Uhrig and Daniel Hübschmann and Heiko Brennenstuhl},
  title = {aRgus: Multilevel visualization of non-synonymous single nucleotide variants &ampmathsemicolon advanced pathogenicity score modeling for genetic vulnerability assessment},
  journal = {Computational and Structural Biotechnology Journal},
  publisher = {Elsevier BV},
  year = {2023},
  volume = {21},
  pages = {1077--1083},
  url = {https://www.sciencedirect.com/science/article/pii/S2001037023000235?via%3Dihub},
  doi = {https://doi.org/10.1016/j.csbj.2023.01.027}
}

@article{Ahadova2022Is,
  author = {Ahadova, Aysel and Witt, Johannes and Haupt, Saskia and Gallon, Richard and Hüneburg, Robert and Nattermann, Jacob and ten Broeke, Sanne and Bohaumilitzky, Lena and HernandezSanchez, Alejandro and SantibanezKoref, Mauro and Jackson, Michael S. and Ahtiainen, Maarit and Pylvänäinen, Kirsi and Andini, Katarina and Grolmusz, Vince Kornel and Möslein, Gabriela and DominguezValentin, Mev and Møller, Pral and Fürst, Daniel and Sijmons, Rolf and Borthwick, Gillian M. and Burn, John and Mecklin, JukkaPekka and Heuveline, Vincent and von Knebel Doeberitz, Magnus and Seppälä, Toni and Kloor, Matthias},
  title = {Is HLA type a possible cancer risk modifier in Lynch syndrome?},
  journal = {International Journal of Cancer},
  publisher = {Wiley},
  year = {2023},
  url = {https://onlinelibrary.wiley.com/doi/10.1002/ijc.34312},
  doi = {https://doi.org/10.1002/ijc.34312}
}

@article{Witt2022simple,
  author = {Witt, Johannes and Haupt, Saskia and Ahadova, Aysel and Bohaumilitzky, Lena and Fuchs, Vera and Ballhausen, Alexej and Przybilla, Moritz Jakob and Jendrusch, Michael and Seppälä, Toni T. and Fürst, Daniel and Walle, Thomas and Busch, Elena and Haag, Georg Martin and Hüneburg, Robert and Nattermann, Jacob and von Knebel Doeberitz, Magnus and Heuveline, Vincent and Kloor, Matthias},
  title = {A simple approach for detecting {HLAA} *02 alleles in archival formalinfixed paraffinembedded tissue samples and an application example for studying cancer immunoediting},
  journal = {HLA},
  publisher = {Wiley},
  year = {2023},
  url = {https://onlinelibrary.wiley.com/doi/10.1111/tan.14846},
  doi = {https://doi.org/10.1111/tan.14846}
}

@inproceedings{Alpay2022,
  author = {Aksel Alpay and Bálint Soproni and Holger Wünsche and Vincent Heuveline},
  title = {Exploring the possibility of a hipSYCL-based implementation of oneAPI},
  booktitle = {International Workshop on OpenCL},
  publisher = {ACM},
  year = {2022},
  url = {https://doi.org/10.1145/3529538.3530005},
  doi = {https://doi.org/10.1145/3529538.3530005}
}

@incollection{Markomanolis2022,
  author = {George S. Markomanolis and Aksel Alpay and Jeffrey Young and Michael Klemm and Nicholas Malaya and Aniello Esposito and Jussi Heikonen and Sergei Bastrakov and Alexander Debus and Thomas Kluge and Klaus Steiniger and Jan Stephan and Rene Widera and Michael Bussmann},
  title = {Evaluating GPU Programming Models for the LUMI Supercomputer},
  booktitle = {Supercomputing Frontiers},
  publisher = {Springer International Publishing},
  year = {2022},
  pages = {79--101},
  url = {https://doi.org/10.1007/978-3-031-10419-0_6},
  doi = {https://doi.org/10.1007/978-3-031-10419-0_6}
}

@article{Sirazitdinov2022,
  author = {Andrei Sirazitdinov and Marcus Buchwald and Jürgen Hesser and Vincent Heuveline},
  title = {Review of Deep Learning Methods for Individual Treatment Effect Estimation with Automatic Hyperparameter Optimization},
  journal = {TechRxiv},
  year = {2022},
  url = {https://www.techrxiv.org/articles/preprint/Review_of_Deep_Learning_Methods_for_Individual_Treatment_Effect_Estimation_with_Automatic_Hyperparameter_Optimization/20448768},
  doi = {https://doi.org/10.36227/techrxiv.20448768.v2}
}

@article{Mller2022Colorectal,
  author = {Møller, Pral and Seppälä, Toni and Dowty, James G. and Haupt, Saskia and Dominguez-Valentin, Mev and Sunde, Lone and Bernstein, Inge and Engel, Christoph and Aretz, Stefan and Nielsen, Maartje and Capella, Gabriel and Evans, Dafydd Gareth and Burn, John and Holinski-Feder, Elke and Bertario, Lucio and Bonanni, Bernardo and Lindblom, Annika and Levi, Zohar and Macrae, Finlay and Winship, Ingrid and Plazzer, John-Paul and Sijmons, Rolf and Laghi, Luigi and Valle, Adriana Della and Heinimann, Karl and Half, Elizabeth and Lopez-Koestner, Francisco and Alvarez-Valenzuela, Karin and Scott, Rodney J. and Katz, Lior and Laish, Ido and Vainer, Elez and Vaccaro, Carlos Alberto and Carraro, Dirce Maria and Gluck, Nathan and Abu-Freha, Naim and Stakelum, Aine and Kennelly, Rory and Winter, Des and Rossi, Benedito Mauro and Greenblatt, Marc and Bohorquez, Mabel and Sheth, Harsh and Tibiletti, Maria Grazia and Lino-Silva, Leonardo S. and Horisberger, Karoline and Portenkirchner, Carmen and Nascimento, Ivana and Rossi, Norma Teresa and da Silva, Leandro Apolinário and Thomas, Huw and Zaránd, Attila and Mecklin, Jukka-Pekka and Pylvänäinen, Kirsi and Renkonen-Sinisalo, Laura and Lepisto, Anna and Peltomäki, Päivi and Therkildsen, Christina and Lindberg, Lars Joachim and Thorlacius-Ussing, Ole and von Knebel Doeberitz, Magnus and Loeffler, Markus and Rahner, Nils and Steinke-Lange, Verena and Schmiegel, Wolff and Vangala, Deepak and Perne, Claudia and Hüneburg, Robert and de Vargas, Aída Falc on and Latchford, Andrew and Gerdes, Anne-Marie and Backman, Ann-Sofie and Guillén-Ponce, Carmen and Snyder, Carrie and Lautrup, Charlotte K. and Amor, David and Palmero, Edenir and Stoffel, Elena and Duijkers, Floor and Hall, Michael J. and Hampel, Heather and Williams, Heinric and Okkels, Henrik and Lubiʼnski, Jan and Reece, Jeanette and Ngeow, Joanne and Guillem, Jose G. and Arnold, Julie and Wadt, Karin and Monahan, Kevin and Senter, Leigha and Rasmussen, Lene J. and van Hest, Liselotte P. and Ricciardiello, Luigi and Kohonen-Corish, Maija R. J. and Ligtenberg, Marjolijn J. L. and Southey, Melissa and Aronson, Melyssa and Zahary, Mohd N. and Samadder, N. Jewel and Poplawski, Nicola and Hoogerbrugge, Nicoline and Morrison, Patrick J. and James, Paul and Lee, Grant and Chen-Shtoyerman, Rakefet and Ankathil, Ravindran and Pai, Rish and Ward, Robyn and Parry, Susan and Dębniak, Tadeusz and John, Thomas and van Overeem Hansen, Thomas and Caldés, Trinidad and Yamaguchi, Tatsuro and Barca-Tierno, Verónica and Garre, Pilar and Cavestro, Giulia Martina and Weitz, Jürgen and Redler, Silke and Büttner, Reinhard and Heuveline, Vincent and Hopper, John L. and Win, Aung Ko and Lindor, Noralane and Gallinger, Steven and Le Marchand, Loïc and Newcomb, Polly A. and Figueiredo, Jane and Buchanan, Daniel D. and Thibodeau, Stephen N. and ten Broeke, Sanne W. and Hovig, Eivind and Nakken, Sigve and Pineda, Marta and Dueñas, Nuria and Brunet, Joan and Green, Kate and Lalloo, Fiona and Newton, Katie and Crosbie, Emma J. and Mints, Miriam and Tjandra, Douglas and Neffa, Florencia and Esperon, Patricia and Kariv, Revital and Rosner, Guy and Pavicic, Walter Hernán and Kalfayan, Pablo and Torrezan, Giovana Tardin and Bassaneze, Thiago and Martin, Claudia and Moslein, Gabriela and Ahadova, Aysel and Kloor, Matthias and Sampson, Julian R. and Jenkins, Mark A.},
  title = {Colorectal cancer incidences in Lynch syndrome: a comparison of results from the prospective lynch syndrome database and the international mismatch repair consortium},
  journal = {Hereditary Cancer in Clinical Practice},
  publisher = {Springer Science and Business Media LLC},
  year = {2022},
  volume = {20},
  number = {1},
  url = {https://hccpjournal.biomedcentral.com/articles/10.1186/s13053-022-00241-1},
  doi = {https://doi.org/10.1186/s13053-022-00241-1}
}

@article{Lsel2022,
  author = {Philipp D. Lösel and Coline Monchanin and Renaud Lebrun and Alejandra Jayme and Jacob Relle and Jean-Marc Devaud and Vincent Heuveline and Mathieu Lihoreau},
  title = {Natural variability in bee brain size and symmetry revealed by micro-CT imaging and deep learning},
  journal = {bioRxiv},
  publisher = {Cold Spring Harbor Laboratory},
  year = {2022},
  url = {https://www.biorxiv.org/content/10.1101/2022.10.12.511944v3},
  doi = {https://doi.org/10.1101/2022.10.12.511944}
}

@article{Zaunseder2022,
  author = {Zaunseder, Elaine and Haupt, Saskia and Mütze, Ulrike and Garbade, Sven F. and Kölker, Stefan and Heuveline, Vincent},
  title = {Opportunities and challenges in machine learning-based newborn screening—A systematic literature review},
  journal = {JIMD Reports},
  year = {2022},
  volume = {n/a},
  number = {n/a},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmd2.12285},
  doi = {https://doi.org/10.1002/jmd2.12285}
}

@article{Braun2021,
  author = {Lorenz Braun and Sotirios Nikas and Chen Song and Vincent Heuveline and Holger Fröning},
  title = {A Simple Model for Portable and Fast Prediction of Execution Time and Power Consumption of GPU Kernels},
  journal = {ACM Transactions on Architecture and Code Optimization},
  publisher = {Association for Computing Machinery (ACM)},
  year = {2021},
  volume = {18},
  number = {1},
  pages = {1--25},
  url = {https://doi.org/10.1145/3431731},
  doi = {https://doi.org/10.1145/3431731}
}

@inproceedings{Deakin2021,
  author = {Tom Deakin and Simon McIntosh-Smith and Aksel Alpay and Vincent Heuveline},
  title = {Benchmarking and Extending SYCL Hierarchical Parallelism},
  booktitle = {2021 IEEE/ACM International Workshop on Hierarchical Parallelism for Exascale Computing (HiPar)},
  publisher = {IEEE},
  year = {2021},
  url = {https://doi.org/10.1109/hipar54615.2021.00007},
  doi = {https://doi.org/10.1109/hipar54615.2021.00007}
}

@article{Nessel2021,
  author = {Regine Nessel and Thorsten Löffler and Johannes Rinn and Philipp Lösel and Samuel Voss and Vincent Heuveline and Matthias Vollmer and Johannes Görich and Yannique-Maximilian Ludwig and Luai Al-Hileh and Friedrich Kallinowski},
  title = {Primary and Recurrent Repair of Incisional Hernia Based on Biomechanical Considerations to Avoid Mesh-Related Complications},
  journal = {Frontiers in Surgery},
  publisher = {Frontiers Media SA},
  year = {2021},
  volume = {8},
  url = {https://www.frontiersin.org/articles/10.3389/fsurg.2021.764470/full},
  doi = {https://doi.org/10.3389/fsurg.2021.764470}
}

@article{Kallinowski2021,
  author = {Friedrich Kallinowski and Yannique Ludwig and Dominik Gutjahr and Christian Gerhard and Hannah Schulte-Hörmann and Lena Krimmel and Carolin Lesch and Katharina Uhr and Philipp Lösel and Samuel Voß and Vincent Heuveline and Matthias Vollmer and Johannes Görich and Regine Nessel},
  title = {Biomechanical Influences on Mesh-Related Complications in Incisional Hernia Repair},
  journal = {Frontiers in Surgery},
  publisher = {Frontiers Media SA},
  year = {2021},
  volume = {8},
  url = {https://www.frontiersin.org/articles/10.3389/fsurg.2021.763957/full},
  doi = {https://doi.org/10.3389/fsurg.2021.763957}
}

@article{Haupt2021,
  author = {Saskia Haupt and Nils Gleim and Aysel Ahadova and Hendrik Bläker and Magnus Knebel Doeberitz and Matthias Kloor and Vincent Heuveline},
  title = {A computational model for investigating the evolution of colonic crypts during Lynch syndrome carcinogenesis},
  journal = {Computational and Systems Oncology},
  publisher = {Wiley},
  year = {2021},
  volume = {1},
  number = {2},
  url = {https://doi.org/10.1002/cso2.1020},
  doi = {https://doi.org/10.1002/cso2.1020}
}

@article{Haupt2021,
  author = {Saskia Haupt and Alexander Zeilmann and Aysel Ahadova and Hendrik Bläker and Magnus von Knebel Doeberitz and Matthias Kloor and Vincent Heuveline},
  title = {Mathematical modeling of multiple pathways in colorectal carcinogenesis using dynamical systems with Kronecker structure},
  journal = {PLOS Computational Biology},
  publisher = {Public Library of Science (PLoS)},
  year = {2021},
  volume = {17},
  number = {5},
  pages = {e1008970},
  url = {https://doi.org/10.1371/journal.pcbi.1008970},
  doi = {https://doi.org/10.1371/journal.pcbi.1008970}
}

@article{Kallinowski2021,
  author = {F. Kallinowski and Y. Ludwig and T. Löffler and M. Vollmer and P.D. Lösel and S. Voß and J. Görich and V. Heuveline and R. Nessel},
  title = {Biomechanics applied to incisional hernia repair – Considering the critical and the gained resistance towards impacts related to pressure},
  journal = {Clinical Biomechanics},
  publisher = {Elsevier BV},
  year = {2021},
  volume = {82},
  url = {https://doi.org/10.1016/j.clinbiomech.2020.105253},
  doi = {https://doi.org/10.1016/j.clinbiomech.2020.105253}
}

@article{https://doi.org/10.11588/emclpp.2021.01.81012,
  author = {Song, Chen and Roller, Jonas and Ponce-Bobadilla, Ana Victoria and Palacio-Escat, Nicolas and Saez-Rodriguez, Julio and Heuveline, Vincent},
  title = {Spatial Effect on Separatrix of Two-Cell System and Parameter Sensitivity Analysis},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  publisher = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2021},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/81012},
  doi = {https://doi.org/10.11588/EMCLPP.2021.01.81012}
}

@article{https://doi.org/10.17885/heiup.hdjbo.2021.1,
  author = {Heuveline, Vincent and Stiefel, Viola},
  title = {Künstliche Intelligenz und Algorithmen– Wahrer Fortschritt oder doch nurdigitale Alchemie?},
  journal = {Heidelberger Jahrbücher Online, Bd. 6 (2021): Intelligenz – Theoretische Grundlagen und praktische Anwendungen},
  year = {2021},
  doi = {https://doi.org/10.17885/heiup.hdjbo.2021.1.24390}
}

@article{https://doi.org/10.11588/emclpp.2021.02.81078,
  author = {Jayme, Alejandra and Lösel, Philipp D. and Fischer, Joachim and Heuveline, Vincent},
  title = {Comparison of Machine Learning Methods for Predicting Employee Absences},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  publisher = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2021},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/81078},
  doi = {https://doi.org/10.11588/EMCLPP.2021.02.81078}
}

@incollection{Schween2021,
  author = {Nils Schween and Philipp Gerstner and Nico Meyer-H"ubner and Vincent Heuveline},
  title = {New Time Step Strategy for Multi-period Optimal Power Flow Problems},
  booktitle = {Mathematical Modeling, Simulation and Optimization for Power Engineering and Management},
  publisher = {Springer International Publishing},
  year = {2021},
  pages = {199--217},
  url = {https://doi.org/10.1007/978-3-030-62732-4_9},
  doi = {https://doi.org/10.1007/978-3-030-62732-4_9}
}

@article{Haupt2020,
  author = {Saskia Haupt and Nils Gleim and Aysel Ahadova and Hendrik Bläker and Magnus von Knebel Doeberitz and Matthias Kloor and Vincent Heuveline},
  title = {Computational model investigates the evolution of colonic crypts during Lynch syndrome carcinogenesis},
  journal = {bioRxiv},
  publisher = {Cold Spring Harbor Laboratory},
  year = {2021},
  url = {https://doi.org/10.1101/2020.12.29.424555},
  doi = {https://doi.org/10.1101/2020.12.29.424555}
}

@article{Haupt2020b,
  author = {Saskia Haupt and Alexander Zeilmann and Aysel Ahadova and Magnus von Knebel Doeberitz and Matthias Kloor and Vincent Heuveline},
  title = {Mathematical Modeling of Multiple Pathways in Colorectal Carcinogenesis using Dynamical Systems with Kronecker Structure},
  publisher = {Cold Spring Harbor Laboratory},
  year = {2021},
  url = {https://doi.org/10.1101%2F2020.08.14.250175},
  doi = {http://doi.org/10.1101/2020.08.14.250175}
}

@incollection{Lal2020,
  author = {Sohan Lal and Aksel Alpay and Philip Salzmann and Biagio Cosenza and Alexander Hirsch and Nicolai Stawinoga and Peter Thoman and Thomas Fahringer and Vincent Heuveline},
  title = {SYCL-Bench: A Versatile Cross-Platform Benchmark Suite for Heterogeneous Computing},
  booktitle = {Euro-Par 2020: Parallel Processing},
  publisher = {Springer International Publishing},
  year = {2020},
  pages = {629--644},
  url = {https://doi.org/10.1007/978-3-030-57675-2_39},
  doi = {https://doi.org/10.1007/978-3-030-57675-2_39}
}

@article{Lsel2020,
  author = {Philipp D. Lösel and Thomas van de Kamp and Alejandra Jayme and Alexey Ershov and Tomáš Faragó and Olaf Pichler and Nicholas Tan Jerome and Narendar Aadepu and Sabine Bremer and Suren A. Chilingaryan and Michael Heethoff and Andreas Kopmann and Janes Odar and Sebastian Schmelzle and Marcus Zuber and Joachim Wittbrodt and Tilo Baumbach and Vincent Heuveline},
  title = {Introducing Biomedisa as an open-source online platform for biomedical image segmentation},
  journal = {Nature Communications},
  publisher = {Springer Science and Business Media LLC},
  year = {2020},
  volume = {11},
  number = {1},
  url = {https://doi.org/10.1038/s41467-020-19303-w},
  doi = {https://doi.org/10.1038/s41467-020-19303-w}
}

@article{Ballhausen_2020,
  author = {Alexej Ballhausen and Moritz Jakob Przybilla and Michael Jendrusch and Saskia Haupt and Elisabeth Pfaffendorf and Florian Seidler and Johannes Witt and Alejandro Hernandez Sanchez and Katharina Urban and Markus Draxlbauer and Sonja Krausert and Aysel Ahadova and Martin Simon Kalteis and Pauline L. Pfuderer and Daniel Heid and Damian Stichel and Johannes Gebert and Maria Bonsack and Sarah Schott and Hendrik Bläker and Toni Seppälä and Jukka-Pekka Mecklin and Sanne Ten Broeke and Maartje Nielsen and Vincent Heuveline and Julia Krzykalla and Axel Benner and Angelika Beate Riemer and Magnus von Knebel Doeberitz and Matthias Kloor},
  title = {The shared frameshift mutation landscape of microsatellite-unstable cancers suggests immunoediting during tumor evolution},
  journal = {Nature Communications},
  publisher = {Springer Science and Business Media LLC},
  year = {2020},
  volume = {11},
  number = {1},
  url = {https://doi.org/10.1038%2Fs41467-020-18514-5},
  doi = {http://doi.org/10.1038/s41467-020-18514-5}
}

@article{Blaeker2020a,
  author = {Hendrik Bläker and Saskia Haupt and Monika Morak and Elke Holinski-Feder and Alexander Arnold and David Horst and Julia Sieber-Frank and Florian Seidler and Moritz von Winterfeld and Elizabeth Alwers and Jenny Chang-Claude and Hermann Brenner and Wilfried Roth and Christoph Engel and Markus Löffler and Gabriela Möslein and Hans-Konrad Schackert and Jürgen Weitz and Claudia Perne and Stefan Aretz and Robert Hüneburg and Wolff Schmiegel and Deepak Vangala and Nils Rahner and Verena Steinke-Lange and Vincent Heuveline and Magnus von Knebel Doeberitz and Aysel Ahadova and Michael Hoffmeister and Matthias Kloor and},
  title = {Age-dependent performance of BRAF mutation testing in Lynch syndrome diagnostics},
  journal = {International Journal of Cancer},
  publisher = {Wiley},
  year = {2020},
  url = {https://doi.org/10.1002%2Fijc.33273},
  doi = {http://doi.org/10.1002/ijc.33273}
}

@article{doi:10.1002/ar.24463,
  author = {Brenna, Cinzia and Khan, Arif ul Maula and Picascia, Tiziana and Sun, Quanchao and Heuveline, Vincent and Gretz, Norbert},
  title = {New technical approaches for 3D morphological imaging and quantification of measurements},
  journal = {The Anatomical Record},
  year = {2020},
  volume = {n/a},
  number = {n/a},
  url = {https://anatomypubs.onlinelibrary.wiley.com/doi/abs/10.1002/ar.24463},
  doi = {http://doi.org/10.1002/ar.24463}
}

@article{Haput2020a,
  author = {Haupt, Saskia and Fard-Rutherford, Nassim and Lösel, Philipp and Grenacher, Lars and Mehrabi, Arianeb and Heuveline, Vincent},
  title = {Mathematical Clustering Based on Cross-Sections in Medicine: Application to the Pancreatic Neck},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2020},
  volume = {0},
  number = {01},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/72573},
  doi = {http://doi.org/10.11588/emclpp.2020.01.72573}
}

@article{Zhang2020a,
  author = {W. Zhang and G. Mu and C. Song and G. Yan and V. Heuveline},
  title = {Extraction of Spatial-Temporal Features of Bus Loads in Electric Grids Through Clustering in a Dynamic Model Space},
  journal = {IEEE Access},
  year = {2020},
  volume = {8},
  pages = {5852-5861}
}

@article{https://doi.org/10.11588/emclpp.2019.02.62749,
  author = {Schween, Nils and Meyer-Hübner, Nico and Gerstner, Philipp and Heuveline, Vincent},
  title = {A time step reduction method for Multi-Period Optimal Power Flow problems},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  publisher = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2019},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/62749},
  doi = {https://doi.org/10.11588/EMCLPP.2019.02.62749}
}

@article{Ballhausen2019a,
  author = {Ballhausen, Alexej and Przybilla, Moritz Jakob and Jendrusch, Michael and Haupt, Saskia and Pfaffendorf, Elisabeth and Draxlbauer, Markus and Seidler, Florian and Krausert, Sonja and Ahadova, Aysel and Kalteis, Martin Simon and Heid, Daniel and Gebert, Johannes and Bonsack, Maria and Schott, Sarah and Bläker, Hendrik and Seppälä, Toni and Mecklin, Jukka-Pekka and Broeke, Sanne Ten and Nielsen, Maartje and Heuveline, Vincent and Krzykalla, Julia and Benner, Axel and Riemer, Angelika Beate and von Knebel Doeberitz, Magnus and Kloor, Matthias},
  title = {The shared neoantigen landscape of MSI cancers reflects immunoediting during tumor evolution},
  journal = {bioRxiv},
  publisher = {Cold Spring Harbor Laboratory},
  year = {2019},
  url = {https://www.biorxiv.org/content/early/2019/07/16/691469},
  doi = {http://doi.org/10.1101/691469}
}

@article{Blaaker2019a,
  author = {Bläker, Hendrik and Haupt, Saskia and Morak, Monika and Holinski-Feder, Elke and Arnold, Alexander and Horst, David and Sieber-Frank, Julia and Seidler, Florian and von Winterfeld, Moritz and Alwers, Elizabeth and Chang-Claude, Jenny and Brenner, Hermann and Roth, Wilfried and Engel, Christoph and Löffler, Markus and Möslein, Gabriela and Schackert, Hans-Konrad and Weitz, Jürgen and Perne, Claudia and Aretz, Stefan and Hüneburg, Robert and Schmiegel, Wolff and Vangala, Deepak and Rahner, Nils and Steinke-Lange, Verena and Heuveline, Vincent and von Knebel Doeberitz, Magnus and Ahadova, Aysel and Hoffmeister, Michael and Kloor, Matthias and ,},
  title = {BRAF mutation testing of MSI CRCs in Lynch syndrome diagnostics: performance and efficiency according to patient‘s age},
  journal = {medRxiv},
  publisher = {Cold Spring Harbor Laboratory Press},
  year = {2019},
  url = {https://www.medrxiv.org/content/early/2019/10/16/19009274},
  doi = {http://doi.org/10.1101/19009274}
}

@article{Seelig2019a,
  author = {Torsten Seelig and Antoine Meyer and Philipp Gerstner and Martin Meier and Marcel Jongmanns and Martin Baumann and Vincent Heuveline and Christoph Egbers},
  title = {Dielectrophoretic force-driven convection in annular geometry under Earth’s gravity},
  journal = {International Journal of Heat and Mass Transfer},
  year = {2019},
  volume = {139},
  pages = {386 - 398},
  url = {http://www.sciencedirect.com/science/article/pii/S0017931018361854},
  doi = {http://doi.org/10.1016/j.ijheatmasstransfer.2019.04.068}
}

@article{Gerstner2019a,
  author = {Gerstner, Philipp and Baumann, Martin and Heuveline, Vincent},
  title = {Analysis of the Stationary Thermal-Electro Hydrodynamic Boussinesq Equations},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2019},
  number = {01}
}

@inproceedings{John2019a,
  author = {John, David and Heuveline, Vincent and Schober, Michael},
  title = {GOODE: A Gaussian Off-The-Shelf Ordinary Differential Equation Solver},
  booktitle = {Proceedings of the 36th International Conference on Machine Learning},
  publisher = {PMLR},
  year = {2019},
  volume = {97},
  pages = {3152--3162},
  url = {http://proceedings.mlr.press/v97/john19a.html}
}

@article{Huang2019,
  author = {Huang, Jiaguo and Brenna, Cinzia and Khan, Arif ul Maula and Daniele, Cristina and Rudolf, Rüdiger and Heuveline, Vincent and Gretz, Norbert},
  title = {A cationic near infrared fluorescent agent and ethyl-cinnamate tissue clearing protocol for vascular staining and imaging},
  journal = {Nature Scientific Reports},
  year = {2019},
  volume = {9},
  number = {1},
  pages = {521},
  url = {https://doi.org/10.1038/s41598-018-36741-1}
}

@article{vandeKamp2018,
  author = {van de Kamp, Thomas and Schwermann, Achim H. and dos Santos Rolo, Tomy and Lösel, Philipp D. and Engler, Thomas and Etter, Walter and Faragó, Tomás and Göttlicher, Jörg and Heuveline, Vincent and Kopmann, Andreas and Mähler, Bastian and Mörs, Thomas and Odar, Janes and Rust, Jes and Tan Jerome, Nicholas and Vogelgesang, Matthias and Baumbach, Tilo and Krogmann, Lars},
  title = {Parasitoid biology preserved in mineralized fossils},
  journal = {Nature Communications},
  year = {2018},
  volume = {9},
  number = {1},
  pages = {3325},
  url = {https://doi.org/10.1038/s41467-018-05654-y},
  doi = {http://doi.org/10.1038/s41467-018-05654-y}
}

@article{seelig2018dielectrophoretic,
  title={Dielectrophoretic force-driven convection in annular geometry under Earth's gravity},
  author={Seelig, Torsten and Meyer, Antoine and Gerstner, Philipp and Meier, Martin and Jongmanns, Marcel and Baumann, Martin and Heuveline, Vincent and Egbers, Christoph},
  journal={arXiv preprint arXiv:1812.05460},
  year={2018}
}

@incollection{mexner2018opengl,
  title={OpenGL{\textregistered} API-Based Analysis of Large Datasets in a Cloud Environment},
  author={Mexner, Wolfgang and Bonn, Matthias and Kopmann, Andreas and Mauch, Viktor and Ressmann, Doris and Chilingaryan, Suren A and Jerome, Nicholas Tan and van de Kamp, Thomas and Heuveline, Vincent and L{\"o}sel, Philipp},
  booktitle={Design and Use of Virtualization Technology in Cloud Computing},
  pages={161--181},
  year={2018},
  publisher={IGI Global},
  doi = {https://doi.org/10.4018/978-1-5225-2785-5.ch006}
}

@article{john2018bayesian,
  title={Bayesian inference for estimating model discrepancy of an electric motor},
  author={John, David and Schick, Michael and Heuveline, Vincent},
  journal={PAMM},
  volume={18},
  number={1},
  pages={1--2},
  year={2018},
  publisher={Wiley Online Library}
}

@article{emclpp56653,
  author = {Simon Gawlok and Vincent Heuveline},
  title = {Nested Schur-Complement Solver for a Low-Mach Number Model: Application to a Cyclone-Cyclone Interaction},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2018},
  volume = {0},
  number = {02},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/56653},
  doi = {https://doi.org/10.11588/emclpp.2018.02.56653}
}

@article{emclpp51320,
  author = {David John and Michael Schick and Vincent Heuveline},
  title = {Learning model discrepancy of an electric motor with Bayesian inference},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2018},
  volume = {0},
  number = {01},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/51320},
  doi = {http://doi.org/10.11588/emclpp.2018.1.51320}
}

@article{OpenGL2017a,
  author = {Mexner, Wolfgang and Bonn, Matthias and Kopmann, Andreas and Mauch, Viktor and Ressmann, Doris and Chilingaryan, Suren A. and Jerome, Nicholas Tan and Kamp, Thomas Van De and Heuveline, Vincent and Lösel, Philipp and et al.},
  title = {OpenGL® API-Based Analysis of Large Datasets in a Cloud Environment},
  journal = {Advances in Computer and Electrical Engineering Design and Use of Virtualization Technology in Cloud Computing},
  year = {2018},
  pages = {161–181},
  doi = {http://dx.doi.org/10.4018/978-1-5225-2785-5.ch006}
}

@misc{Baumann2017a,
  author = {Baumann, Martin and Effinger, Maria and Eller, Dirk and Heuveline, Vincent and Kempf, Christian and Loos, Lukas and Maylein, Leonhard and Peltzer, Jörg and Pfeiffer, Michelle and Probst, Veit and others},
  title = {heiMAP: Virtueller Kartentisch},
  year = {2017},
  url = {http://www.ub.uni-heidelberg.de/archiv/22880},
  doi = {http://dx.doi.org/10.11588/heidok.00022880}
}

@misc{Baumann2017b,
  author = {Baumann, Martin and Gehbart, Fabian and Mattes, Oliver and Nikas, Sotirios and Heuveline, Vincent},
  title = {Development and implementation of a temperature monitoring system for HPC systems},
  booktitle = {Parallel-Algorithmen, -Rechnerstrukturen und -Systemsoftware (PARS)},
  publisher = {Gesellschaft für Informatik e.V.},
  year = {2017},
  url = {http://fg-pars.gi.de/pars-mitteilungen/}
}

@misc{Bertsch2017a,
  author = {Bertsch, Valentin and Fichtner, Wolf and Heuveline, Vincent and Leibfried, Thomas},
  title = {Advances in Energy System Optimization: Proceedings of the first International Symposium on Energy System Optimization},
  publisher = {Springer},
  year = {2017},
  doi = {https://doi.org/10.1007/978-3-319-51795-7}
}

@article{https://doi.org/10.11588/heibooks.285.377,
  author = {Kratzke, Jonas and Heuveline, Vincent},
  title = {E-Science-Tage 2017},
  publisher = {University Library Heidelberg},
  year = {2017},
  url = {http://books.ub.uni-heidelberg.de/index.php/heibooks/catalog/book/285},
  doi = {https://doi.org/10.11588/HEIBOOKS.285.377}
}

@article{emclpp38711,
  author = {Thomas Loderer and Vincent Heuveline},
  title = {New sparsing approach for real-time simulations of stiff models on electronic control units},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2017},
  volume = {0},
  number = {02},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/38711},
  doi = {http://dx.doi.org/10.11588/emclpp.2017.02.38711}
}

@article{emclpp42079,
  author = {Nicolai Schoch and Vincent Heuveline},
  title = {Towards an Intelligent Framework for Personalized Simulation-enhanced Surgery Assistance: Linking a Simulation Ontology to a Reinforcement Learning Algorithm for Calibration of Numerical Simulations},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2017},
  volume = {0},
  number = {05},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/42079},
  doi = {http://dx.doi.org/10.11588/emclpp.2017.05.42079}
}

@article{emclpp42879,
  author = {Simon Gawlok and Philipp Gerstner and Saskia Haupt and Vincent Heuveline and Jonas Kratzke and Philipp Lösel and Katrin Mang and Mareike Schmidtobreick and Nicolai Schoch and Nils Schween and Jonathan Schwegler and Chen Song and Martin Wlotzka},
  title = {HiFlow3 – Technical Report on Release 2.0},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2017},
  volume = {0},
  number = {06},
  url = {https://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/42879},
  doi = {http://dx.doi.org/10.11588/emclpp.2017.06.42879}
}

@inproceedings{Heuveline2017a,
  author = {Heuveline, Vincent and Schick, Michael and Webster, Clayton and Zaspel, Peter},
  title = {Uncertainty Quantification and High Performance Computing (Dagstuhl Seminar 16372)},
  booktitle = {Dagstuhl Reports},
  year = {2017},
  volume = {6},
  number = {9}
}

@article{Klatt2017a,
  author = {Klatt, S and Kraus, D and Kraft, P and Breuer, L and Wlotzka, M and Heuveline, V and Haas, E and Kiese, R and Butterbach-Bahl, Klaus},
  title = {Exploring impacts of vegetated buffer strips on nitrogen cycling using a spatially explicit hydro-biogeochemical modeling approach},
  journal = {Environmental Modelling & Software},
  publisher = {Elsevier},
  year = {2017},
  volume = {90},
  pages = {55--67},
  doi = {https://doi.org/10.1016/j.envsoft.2016.12.002}
}

@inproceedings{Losel2017a,
  author = { Sebastian Schmelzle and Michael Heethoff and Vincent Heuveline and Philipp Lösel and Jurgen Becker and Felix Beckmann and Frank Schluenzen and Jörg U. Hammel and Andreas Kopmann and Wolfgang Mexner and Matthias Vogelgesang and Nicholas Tan Jerome and Oliver Betz and Rolf Beutel and Benjamin Wipfler and Alexander Blanke and Steffen Harzsch and Marie Hörnig and Tilo Baumbach and Thomas van de Kamp},
  title = {The NOVA project: maximizing beam time efficiency through synergistic analyses of SRmCT data},
  journal = {Proc.SPIE},
  year = {2017},
  volume = {10391},
  pages = {10391 - 10391 - 17},
  url = {http://dx.doi.org/10.1117/12.2275959},
  doi = {http://dx.doi.org/10.1117/12.2275959}
}

@inbook{Losel2017b,
  author = {Lösel, Philipp
 and Heuveline, Vincent},
  title = {A GPU Based Diffusion Method for Whole-Heart and Great Vessel Segmentation},
  booktitle = {Reconstruction, Segmentation, and Analysis of Medical Images, RAMBO 2016 and HVSMR 2016, Athens, Greece, October 17, 2016 },
  publisher = {Lecture Notes in Computer Science Springer International Publishing},
  year = {2017},
  pages = {121--128},
  url = {https://doi.org/10.1007/978-3-319-52280-7_12},
  doi = {http://dx.doi.org/10.1007/978-3-319-52280-7_12}
}

@incollection{Meyer2017a,
  author = {Meyer-Hübner, Nico and Suriyah, Michael and Leibfried, Thomas and Slednev, Viktor and Bertsch, Valentin and Fichtner, Wolf and Gerstner, Philipp and Schick, Michael and Heuveline, Vincent},
  title = {Optimal Storage Operation with Model Predictive Control in the German Transmission Grid},
  booktitle = {Advances in Energy System Optimization},
  publisher = {Birkhäuser, Cham},
  year = {2017},
  pages = {31--45},
  doi = {https://doi.org/10.1007/978-3-319-51795-7}
}

@article{Schoch2015a,
  author = {Schoch, N. and Engelhardt, S. and De Simone, R. and Wolf, I. and Heuveline, V.},
  title = {High Performance Computing for Cognition-Guided Cardiac Surgery:
Soft Tissue Simulation for Mitral Valve Reconstruction in
Knowledge-based Surgery Assistance},
  journal = {Proc. 6th International Conference on High-Performance Scientific Computing 2015 (LNCS Springer)},
  publisher = {Springer Heidelberg},
  year = {2017},
  doi = {https://doi.org/10.1007/978-3-319-67168-0_17}
}

@article{Schoch2017-CSA-FIMH,
  author = {Schoch, N. and Heuveline, V.},
  title = {Towards Cognition-Guided Patient-Specific FEM-based Cardiac Surgery Simulation},
  journal = {Lecture Notes in Computer Science, Proceedings of the "Functional Imaging and Modeling of the Heart (FIMH) 2017"},
  year = {2017},
  doi = {http://dx.doi.org/10.1007/978-3-319-59448-4_12}
}

@incollection{Slednev2017a,
  author = {Slednev, Viktor and Ruppert, Manuel and Bertsch, Valentin and Fichtner, Wolf and Meyer-Hübner, Nico and Suriyah, Michael and Leibfried, Thomas and Gerstner, Philipp and Schick, Michael and Heuveline, Vincent},
  title = {Regionalizing Input Data for Generation and Transmission Expansion Planning Models},
  booktitle = {Advances in Energy System Optimization},
  publisher = {Birkhäuser, Cham},
  year = {2017},
  pages = {205--217},
  doi = {https://doi.org/10.1007/978-3-319-51795-7}
}

@article{Song2017a,
  author = {Chen Song and Markus Stoll and Kristina Giske and Rolf Bendl and Vincent Heuveline},
  title = {Sparse Grids for quantifying motion uncertainties in biomechanical models of radiotherapy patients},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2017},
  volume = {0},
  number = {01},
  url = {http://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/35059},
  doi = {http://dx.doi.org/10.11588/emclpp.2017.01.35059}
}

@inproceedings{Song2017b,
  author = {Song, Chen and Heuveline, Vincent},
  title = {Multilevel preconditioner of Polynomial Chaos Method for quantifying uncertainties in a blood pump},
  booktitle = {International Conference on Uncertainty Quantification in Computational Sciences and Engineering (UNCECOMP), Greece, 2017},
  publisher = {Scopus, Elsevier},
  year = {2017},
  url = {https://2017.uncecomp.org/proceedings/pdf/17204.pdf},
  doi = {https://doi.org/10.7712/120217.5388.17204}
}

@article{Wlotzka2017a,
  author = {Wlotzka, Martin and Heuveline, Vincent},
  title = {Energy-efficient multigrid smoothers and grid transfer operators on multi-core and GPU clusters},
  journal = {Journal of Parallel and Distributed Computing},
  publisher = {Elsevier},
  year = {2017},
  volume = {100},
  pages = {181--192},
  doi = {https://doi.org/10.1016/j.jpdc.2016.05.006}
}

@incollection{Wlotzka2017b,
  author = {Wlotzka, Martin and Heuveline, Vincent and Dolz, Manuel F and Heidari, M Reza and Ludwig, Thomas and Malossi, A Cristiano I and Quintana-Orti, Enrique S},
  title = {Energy-Aware High Performance Computing},
  booktitle = {ICT-Energy Concepts for Energy Efficiency and Sustainability},
  publisher = {InTech},
  year = {2017},
  doi = {https://doi.org/10.5772/66404}
}

@inbook{Wlotzka2017c,
  author = {Wlotzka, M. and Heuveline, V. and Klatt, S. and Kraus, D. and Haas, E. and Kiese, R. and Butterbach-Bahl, K. and Kraft, P. and Breuer, L.},
  title = {Parallel multiphysics simulations using OpenPALM with application to hydrology-biogeochemistry coupling},
  booktitle = {Modeling, Simulation and Optimization of Complex Processes - HPSC 2015},
  publisher = {Springer},
  year = {2017},
  doi = {https://doi.org/10.1007/978-3-319-67168-0_22}
}

@article{Wlotzka2017d,
  author = {Wlotzka, M. and Heuveline, V.},
  title = {An energy-efficient parallel multigrid methods for multi-core CPU platforms and HPC clusters},
  journal = {EMCL Preprint Series},
  year = {2017},
  volume = {03}
}

@article{Wlotzka2017e,
  author = {Wlotzka, M. and Morel, T. and Piacentini, A. and Heuveline, V.},
  title = {New features for advanced dynamic parallel communication routines in OpenPALM: Algorithms and documentation},
  journal = {EMCL Preprint Series},
  year = {2017},
  volume = {04}
}

@inproceedings{Bromberger2016a,
  author = {Bromberger, Michael and Bastian, Pascal and Bergeest, Jan-Philip and Conrad, Christian and Heuveline, Vincent and Rohr, Karl and Karl, Wolfgang},
  title = {FPGA-accelerated Richardson-Lucy deconvolution for 3D image data},
  booktitle = {Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on},
  year = {2016},
  pages = {132--135},
  doi = {https://doi.org/10.1109/isbi.2016.7493228}
}

@inproceedings{Bromberger2016b,
  author = {Bromberger, Michael and Heuveline, Vincent and Karl, Wolfgang},
  title = {Reducing Energy Consumption of Data Transfers Using Runtime Data Type Conversion},
  booktitle = {International Conference on Architecture of Computing Systems},
  year = {2016},
  pages = {239--250},
  doi = {https://doi.org/10.1007/978-3-319-30695-7_18}
}

@inproceedings{FetzerSPIE2016,
  author = {Andreas Fetzer and Jasmin Metzger and Darko Katic and Keno März and Martin Wagner and Patrick Philipp and Sandy Engelhardt and Tobias Weller and Sascha Zelzer and Alfred Franz and Nicolai Schoch and Vincent Heuveline and Maria Maleshkova and Achim Rettinger and Stefanie Speidel and Ivo Wolf and Hannes Kenngott and Arianeb Mehrabi and Beat Müller and Lena Maier-Hein and Hans-Peter Meinzer and Marco Nolden},
  title = {Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery},
  booktitle = {Proceedings of SPIE Medical Imaging 2016: PACS and Imaging Informatics: Next Generation and Innovations},
  year = {2016},
  doi = {https://doi.org/10.1117/12.2217163}
}

@article{Gerstner2016a,
  author = {Gerstner, Philipp and Schick, Michael and Heuveline, Vincent and Meyer-Hübner, Nico and Suriyah, Michael and Leibfried, Thomas and Slednev, Viktor and Fichtner, Wolf and Bertsch, Valentin Valentin},
  title = {A Domain Decomposition Approach for Solving Dynamic Optimal Power Flow Problems in Parallel with Application to the German Transmission Grid},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2016},
  number = {1}
}

@inproceedings{Glaser2016a,
  author = {Glaser, Philipp and Schick, Michael and Petridis, Kosmas and Heuveline, Vincent},
  title = {Comparasion between a Polynomial Chaos surrogate model and Markov Chain Monte-Carlo for invserseE Uncertainty Quantification based on an electric drive test bench},
  publisher = {Scopus, Elsevier},
  year = {2016},
  pages = {8809-8826}
}

@article{Kratzke2016a,
  author = {Kratzke, Jonas and Heuveline, Vincent},
  title = {An analytically solvable benchmark problem for fluid-structure interaction with uncertain parameters},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2016},
  number = {2}
}

@inproceedings{KratzkeSPIE2016,
  author = {Jonas Kratzke, Fabian Rengier, Christian Weis, Carsten J. Beller and Vincent Heuveline},
  title = {In vitro flow assessment: From PC-MRI to computational fluid dynamics including fluid-structure interaction},
  booktitle = {Proceedings of SPIE Medical Imaging 2016:Physics of Medical Imaging},
  year = {2016},
  doi = {https://doi.org/10.1117/12.2217336}
}

@inproceedings{LöselSPIE2016,
  author = {Philipp Lösel and Vincent Heuveline},
  title = {Enhancing a Diffusion Algorithm for 4D Image Segmentation Using Local Information},
  booktitle = {Proceedings of SPIE Medical Imaging 2016: Image Processing},
  year = {2016},
  doi = {https://doi.org/10.1117/12.2216202}
}

@misc{Reble2016a,
  author = {Reble, Pablo and Ludwig, Thomas and Müller, Matthias S and Nagel, Wolfgang E and Heuveline, Vincent},
  title = {Editorial for the special issue on energy-aware high performance computing},
  publisher = {Springer Berlin Heidelberg},
  year = {2016},
  doi = {https://doi.org/10.1007/s00450-016-0323-6}
}

@article{Schick2016a,
  author = {Schick, Michael and Heuveline, Vincent and Le Ma, OP},
  title = {A Newton--Galerkin Method for Fluid Flow Exhibiting Uncertain Periodic Dynamics},
  journal = {SIAM Review},
  publisher = {Society for Industrial and Applied Mathematics},
  year = {2016},
  volume = {58},
  number = {1},
  pages = {119--140},
  doi = {https://doi.org/10.1137/15m104311x}
}

@article{Schoch2016a,
  author = {Schoch, N and Kißler, F and Stoll, M and Engelhardt, S and Simone, R and Wolf, I and Bendl, R and Heuveline, V},
  title = {Comprehensive patient-specific information preprocessing for cardiac surgery simulations},
  journal = {International journal of computer assisted radiology and surgery},
  publisher = {Springer Berlin Heidelberg},
  year = {2016},
  volume = {11},
  number = {6},
  pages = {1051--1059},
  doi = {https://doi.org/10.1007/s11548-016-1397-0}
}

@article{Schoch2016b,
  author = {Schoch, N.
and Speidel, S.
and Sure-Vetter, Y.
and Heuveline, V.},
  title = {Towards Semantic Simulation for Patient-Specific Surgery Assistance},
  journal = {Proc. First International Workshop on Surgical Data Science},
  year = {2016},
  volume = {1},
  pages = {58-63}
}

@article{Schoch2017-SemanticSim-SDS,
  author = {Schoch, N. and Speidel, S. and Sure-Vetter, Y. and Heuveline, V.},
  title = {Towards Semantic Simulation for Patient-Specific Surgery Assistance},
  journal = {Online Proceedings of the International Workshop on Surgical Data Science 2016},
  year = {2016},
  url = {http://www.surgical-data-science.org/wp-content/uploads/2016/06/14-Towards-Semantic-Simulation-for-Patient-Specific-Surgery-Assistance.pdf}
}

@inbook{SchochIJCARS2016,
  author = {Nicolai Schoch and Fabian Kissler and Markus Stoll and Sandy Engelhardt and Raffaele De Simone and Ivo Wolf and Rolf Bendl and Vincent Heuveline},
  title = {Comprehensive patient-specific information preprocessing for cardiac surgery simulations},
  booktitle = {International Journal of Computer Assisted Radiology and Surgery, Special Issue IPCAI 2016},
  publisher = {Springer New York, LLC},
  year = {2016},
  doi = {http://dx.doi.org/10.1007/s11548-016-1397-0}
}

@inproceedings{SchochSPIE2016,
  author = {Nicolai Schoch and Patrick Philipp and Tobias Weller and Sandy Engelhardt and Mykola Volovyk and Andreas Fetzer and Marco Nolden and Raffaele De Simone and Ivo Wolf and Maria Maleshkova and Achim Rettinger and Rudi Studer and Vincent Heuveline},
  title = {Cognitive tools pipeline for assistance of mitral valve surgery},
  booktitle = {Proceedings of SPIE Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling},
  year = {2016},
  doi = {https://doi.org/10.1117/12.2216059}
}

@article{baumann2015,
  author = {Baumann, Martin and Heuveline, Vincent and Scheck, Leonhard and Jones, Sarah C.},
  title = {Goal-oriented adaptivity for idealised tropical cyclones: A binary interaction scenario},
  journal = {Meteorologische Zeitschrift},
  publisher = {Schweizerbart Science Publishers},
  year = {2015},
  pages = {-},
  url = {http://dx.doi.org/10.1127/metz/2015/0591},
  doi = {https://doi.org/10.1127/metz/2015/0591}
}

@incollection{Baumann2015,
  author = {Baumann, Martin and Förstner, Jochen and Heuveline, Vincent and Kratzke, Jonas and Ritterbusch, Sebastian and Vogel, Bernhard and Vogel, Heike},
  title = {Model-Based Visualization of Instationary Geo-Data with Application to Volcano Ash Data},
  booktitle = {Handbook of Geomathematics},
  publisher = {Springer Berlin Heidelberg},
  year = {2015},
  pages = {1417-1441},
  url = {http://dx.doi.org/10.1007/978-3-642-54551-1_87},
  doi = {http://dx.doi.org/10.1007/978-3-642-54551-1_87}
}

@article{hahnELScalibfreeinverse,
  author = {Tobias Hahn and Thiemo Huuk and Anna Osberghaus and Katharina Doninger and Susanne Nath and Stefan Hepbildikler and Vincent Heuveline and Jürgen Hubbuch},
  title = {Calibration-free inverse modeling of ion-exchange chromatography in industrial antibody purification},
  journal = {Engineering in Life Sciences},
  year = {2015},
  volume = {5},
   doi = {https://doi.org/10.1002/elsc.201400248}
}

@article{hahnELSuvinverse,
  author = {Tobias Hahn and Pascal Baumann and Thiemo Huuk and Vincent Heuveline and Jürgen Hubbuch},
  title = {UV absorption-based inverse modelling of protein chromatography},
  journal = {Engineering in Life Sciences},
  year = {2015},
  volume = {4},
  doi = {https://doi.org/10.1002/elsc.201400247}
}

@article{hahnJCEchromx,
  author = {T. Hahn and T. Huuk and V. Heuveline and J. Hubbuch},
  title = {Simulating and Optimizing Preparative Protein Chromatography with ChromX},
  journal = {Journal of Chemical Education},
  year = {2015},
  volume = {6},
   doi = {https://doi.org/10.1021/ed500854a}
}

@inproceedings{Hoecker2015,
  author = {Hoecker, Maximilian and Polsterer, Kai Lars and Kugler, Sven Dennis and Heuveline, Vincent},
  title = {Clustering of Complex Data-Sets Using Fractal Similarity Measures and Uncertainties},
  booktitle = {Computational Science and Engineering (CSE), 2015 IEEE 18th International Conference on},
  year = {2015},
  pages = {82-91},
  url = {fileadmin/images/Publications/Paper_Hoecker_Heuveline.pdf},
  doi = {http://dx.doi.org/10.1109/CSE.2015.35}
}

@incollection{Hoffmann2015,
  author = {Hoffmann, Markus and Gawlok, Simon and Treiber, Eva and Karl, Wolfgang and Heuveline, Vincent},
  title = {Interdisciplinary Practical Course on Parallel Finite Element Method Using HiFlow^3},
  booktitle = {Euro-Par 2015: Parallel Processing Workshops},
  publisher = {Springer International Publishing},
  year = {2015},
  volume = {9523},
  pages = {160-171},
  url = {http://dx.doi.org/10.1007/978-3-319-27308-2_14},
  doi = {http://dx.doi.org/10.1007/978-3-319-27308-2_14}
}

@article{Kratzke2015,
  author = {Kratzke, Jonas and Schick, Michael and Heuveline, Vincent},
  title = {Fluid-Structure Interaction Simulation of an Aortic Phantom with Uncertain Young's Modulus Using the Polynomial Chaos Expansion},
  booktitle = {Applied Mechanics and Materials},
  year = {2015},
  volume = {807},
  pages = {34-44},
  doi = {https://doi.org/10.4028/www.scientific.net/amm.807.34}
}

@inproceedings{KratzkeSPIE2015,
  author = {Jonas Kratzke and Nicolai Schoch and Christian Weis and Matthias Mueller-Eschner and Stefanie Speidel and Mina Farag and Carsten Beller and Vincent Heuveline},
  title = {Enhancing 4D PC-MRI in an aortic phantom considering numerical simulations},
  booktitle = {Proceedings of SPIE Medical Imaging 2015: Physics of Medical Imaging},
  year = {2015},
  doi = {https://doi.org/10.1117/12.2082483}
}

@inproceedings{Schick2015,
  author = {Schick, Micheal and Song, Chen and Heuveline, Vincent},
  title = {A Polynomial Chaos Method for Uncertainty Quantification in Blood Pump Simulation},
  booktitle = {International Conference on Uncertainty Quantification in Computational Sciences and Engineering (UNCECOMP), Greece, 2015},
  publisher = {Scopus, Elsevier},
  year = {2015},
  url = {http://2015.uncecomp.org/proceedings/papers/uncecomp/U506.pdf},
  doi = {https://doi.org/10.7712/120215.4255.506}
}

@misc{Schoch2015,
  author = {Schoch, Nicolai and Kißler, Fabian and Stoll, Markus and Engelhardt, Sandy and de Simone, Raffaele and Wolf, Ivo and Bendl, Rolf and Heuveline, Vincent},
  title = {Comprehensive Pre- & Post-Processing for Numerical Simulations in Cardiac Surgery Assistance},
  year = {2015}
}

@inproceedings{SchochSPIE2015,
  author = {Nicolai Schoch and Sandy Engelhardt and Norbert Zimmermann and Stefanie Speidel and Raffaele De Simone and Ivo Wolf and Vincent Heuveline},
  title = {Integration of a biomechanical simulation for mitral valve reconstruction into a knowledge-based surgery assistance system},
  booktitle = {Proceedings of SPIE Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions, and Modeling},
  year = {2015},
  doi = {https://doi.org/10.1117/12.2082153}
}

@article{vincze2015,
  author = {Vincze, Miklos and Borchert, Sebastian and Achatz, Ulrich and von Larcher, Thomas and Baumann, Martin and Liersch, Claudia and Remmler, Sebastian and Beck, Teresa and Alexandrov, Kiril D. and Egbers, Christoph and Fröhlich, Jochen and Heuveline, Vincent and Hickel, Stefan and Harlander, Uwe},
  title = {Benchmarking in a rotating annulus: a comparative experimental and numerical study of baroclinic wave dynamics},
  journal = {Meteorologische Zeitschrift},
  publisher = {Schweizerbart Science Publishers},
  year = {2015},
  volume = {23},
  number = {6},
  pages = {611-635},
  url = {http://dx.doi.org/10.1127/metz/2014/0600},
  doi = {https://doi.org/10.1127/metz/2014/0600}
}

@inproceedings{Wlotzka2015,
  author = {M. Wlotzka and V. Heuveline},
  title = {Energy-aware mixed precision iterative refinement for linear systems on GPU-accelerated multi-node clusters},
  booktitle = {Proccedings of the 26th GI/ITG Workshop on Parallel Algorithms, Computer Architectures, and System Software},
  year = {2015}
}

@article{Wlotzka2015a,
  author = {Martin Wlotzka and Vincent Heuveline},
  title = {Block-asynchronous and Jacobi smoothers for a multigrid solver on GPU-accelerated HPC clusters},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2015},
  number = {03}
}

@article{Wlotzka2015b,
  author = {M. Wlotzka and A.C.I. Malossi and V. Heuveline and C. Bekas},
  title = {Power and Energy Characterization of Finite Element Matrices on IBM Power},
  journal = {ICT-Energy Letters},
  year = {2015},
  volume = {10}
}

@article{Bauer2014,
  author = {Bauer, Werner and Baumann, Martin and Scheck, Leonhard and Gassmann, Almut and Heuveline, Vincent and Jones, SarahC.},
  title = {Simulation of tropical-cyclone-like vortices in shallow-water ICON-hex using goal-oriented r-adaptivity},
  journal = {Theoretical and Computational Fluid Dynamics},
  publisher = {Springer Berlin Heidelberg},
  year = {2014},
  volume = {28},
  number = {1},
  pages = {107-128},
  url = {http://dx.doi.org/10.1007/s00162-013-0303-4},
  doi = {http://dx.doi.org/10.1007/s00162-013-0303-4}
}

@article{Breitbart2014,
  author = {Breitbart, Jens and Schmidtobreick, Mareike and Heuveline, Vincent},
  title = {Evaluation of the Global Address Space Programming Interface (GASPI)},
  journal = {Proceedings of "28th IEEE International Parallel and Distributed Processing Symposium"},
  publisher = {IEEE Computer Society},
  year = {2014},
  doi = {https://doi.org/10.1109/ipdpsw.2014.83}
}

@misc{emclpp17635,
  author = {Christoph Paulus and Stefan Suwelack and Nicolai Schoch and Stefanie Speidel and Rüdiger Dillmann and Vincent Heuveline},
  title = {Simulation of Complex Cuts in Soft Tissue with the Extended Finite Element Method (X-FEM)},
  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
  year = {2014},
  volume = {0},
  number = {02},
  url = {http://journals.ub.uni-heidelberg.de/index.php/emcl-pp/article/view/17635}
}

@article{hahnCCEcolumnliquidchrom,
  author = {Tobias Hahn and Anja Sommer and Anna Osberghaus and Vincent Heuveline and Jürgen Hubbuch},
  title = {Adjoint-based Estimation and Optimization for Column Liquid Chromatography Models},
  journal = {Computers & Chemical Engineering},
  year = {2014},
  volume = {4},
  doi = {https://doi.org/10.1016/j.compchemeng.2014.01.013}
}

@article{Schick2014,
  author = {Heuveline, V. and Schick, M.},
  title = {A hybrid generalized Polynomial Chaos method for stochastic dynamical systems},
  journal = {International Journal for Uncertainty Quantification},
  year = {2014},
  doi = {https://doi.org/10.1615/int.j.uncertaintyquantification.2012004727}
}

@article{Schick2014a,
  author = {Schick, M. and Heuveline, V. and Le Maître, O. P.},
  title = {A Newton-Galerkin method for fluid flow exhibiting uncertain periodic dynamics},
  journal = {SIAM/ASA Journal on Uncertainty Quantification},
  year = {2014}
}

@inproceedings{Schick2014b,
  author = {M. Schick},
  title = {A Parallel Multilevel Spectral Galerkin Solver for Linear Systems with Uncertain Parameters},
  booktitle = {2014 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing},
  year = {2014},
  pages = {352-359},
  doi = {http://dx.doi.org/10.1109/PDP.2014.82}
}

@inproceedings{Song2014,
  author = {Song, Chen and Stavaker, Kristian and Wlotzka, Martin and Fritzson, Peter and Heuveline, Vincent},
  title = {PDE Modeling with Modelica via FMI Import of HiFlow3 C++ Components with Parallel Multi-Core Simulations},
  booktitle = {Proceedings of the 55th SIMS Conference on Modeling and Simulation},
  year = {2014},
  doi = {https://doi.org/10.11128/sne.25.tn.10316}
}

@article{Suwelack2014,
  author = {Stefan Suwelack and Markus Stoll and Sebastian Schalck and Nicolai Schoch and Ruediger Dillmann and Rolf Bendl and Vincent Heuveline and Stefanie Speidel},
  title = {The Medical Simulation Markup Language (MSML) – Simplifying the Biomechanical Modeling Workflow},
  journal = {MMVR 2014 (Medicine Meets Virtual Reality)},
  year = {2014}
}

@misc{Wlotzka2014,
  author = {Wlotzka, Martin and Heuveline, Vincent},
  title = {A parallel solution scheme for multiphysics evolution problems using OpenPALM},
  year = {2014}
}

@misc{Baumann2013,
  author = {Baumann, Martin and Förstner, Jochen and Heuveline, Vincent and Kratzke, Jonas and Ritterbusch, Sebastian and Vogel, Bernhard and Vogel, Heike},
  title = {Model-based Visualization of Instationary Geo-Data with Application to Volcano Ash Data},
  year = {2013},
  doi = {https://doi.org/10.1007/978-3-642-27793-1_87-4}
}

@misc{emcl-preprint-2013-01,
  author = {Schindewolf, Martin and Rocker, Björn and Karl, Wolfgang and Heuveline, Vincent},
  title = {Evaluation of two Formulations of the Conjugate Gradients Method with Transactional Memory},
  journal = {EMCL Preprint Series},
  year = {2013},
  number = {01},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2013-01.pdf},
  doi = {https://doi.org/10.1007/978-3-642-40047-6_52}
}

@article{Hoecker2013,
  author = {Hoecker, M. and Kunze, M.},
  title = {An on-demand scaling stereoscopic 3D video streaming service in the cloud},
  journal = {Journal of Cloud Computing: Advances, Systems and Applications},
  year = {2013},
  volume = {2:14},
  url = {http://www.journalofcloudcomputing.com/content/2/1/14},
  doi = {http://dx.doi.org/10.1186/2192-113X-2-14}
}

@inproceedings{Nowak2013,
  author = {Nowak, Fabian and Besenfelder, Ingo and Karl, Wolfgang and Schmidtobreick, Mareike and Heuveline, Vincent},
  title = {A Data-Driven Approach for Executing the CG Method on Reconfigurable High-Performance Systems},
  booktitle = {Proceedings of the 26th International Conference on Architecture of Computing Systems},
  publisher = {Springer-Verlag},
  year = {2013},
  pages = {171--182},
  url = {http://dx.doi.org/10.1007/978-3-642-36424-2_15},
  doi = {http://dx.doi.org/10.1007/978-3-642-36424-2_15}
}

@article{Ronnas2013,
  author = {Sebastian Ritterbusch and Staffan Ronna and Irina Waltschlaeger and Philipp Gerstner and Vincent Heuveline},
  title = {Augmented Reality Visualization of Numerical Simulations in Urban Environments},
  journal = {International Journal on Advances in Systems and Measurements},
  year = {2013},
  number = {06}
}

@misc{Schoch2013,
  author = {Schoch, Nicolai and Suwelack, Stefan and Dillmann, Rüdiger and Heuveline, Vincent},
  title = {Simulation of Surgical Cutting in Soft Tissue using the Extended Finite Element Method (X-FEM)},
  year = {2013}
}

@inproceedings{Stavaker2013,
  author = {Stavaker, Kristian and Ronnas, Staffan and Wlotzka, Martin and Heuveline, Vincent and Fritzson, Peter},
  title = {PDE Modeling with Modelica via FMI Import of HiFlow3 C++ Components},
  booktitle = {Proceedings of the 54th SIMS Conference on Modeling and Simulation},
  year = {2013},
  doi = {https://doi.org/10.11128/sne.24.tn.102223}
}

@misc{Wlotzka2013,
  author = {Wlotzka, Martin and Heuveline, Vincent and Haas, Edwin and Klatt, Steffen and Kraus, David and Butterbach-Bahl, Klaus and Kraft, Philipp and Breuer, Lutz},
  title = {Dynamic Simulation of Land Management Effects on Soil N2O Emissions using a coupled Hydrology-Ecosystem Model on the Landscape Scale},
  year = {2013}
}

@incollection{hiflowtools,
  author = {Anzt, H. and Augustin, W. and Baumann, M. and Gengenbach, T. and Hahn, T. and Helfrich-Schkarbanenko, A. and Heuveline, V. and Ketelaer, E. and Lukarski, D. and Nestler, A. and Ritterbusch, S. and Ronnas, S. and Schick, M. and Schmidtobreick, M. and Subramanian, C. and Weiss, J.-P. and Wilhelm, F. and Wlotzka, M.},
  title = {HiFlow3: A Hardware-Aware Parallel Finite Element Package},
  booktitle = {Tools for High Performance Computing 2011},
  publisher = {Springer Berlin Heidelberg},
  year = {2012},
  pages = {139-151},
  url = {http://dx.doi.org/10.1007/978-3-642-31476-6_12},
  doi = {https://doi.org/10.1007/978-3-642-31476-6_12}
}

@article{barzbiomicrofluidics,
  author = {Barz, Dominik and Bockelmann, Hendryk and Heuveline, Vincent},
  title = {Optimization of an electrokinetic mixer for microfluidic applications},
  journal = {Biomicrofluidics},
  year = {2012},
  volume = {6},
  pages = {024123},
  doi = {https://doi.org/10.1063/1.4722000}
}

@inproceedings{Baumann_AMS_TC_Conference2012,
  author = {Baumann, M. and Heuveline, V. and Scheck, L. and Jones, S. C.},
  title = {Construction of Economical Meshes for Tropical Cyclone Forecasting},
  booktitle = {30th Conference on Hurricanes and Tropical Meteorology},
  year = {2012}
}

@article{BioMed2012,
  author = {Rosen, Reem and Ritterbusch, Sebastian and Moeller, Knut and Heuveline, Vincent},
  title = {Risk Analysis For Catheter Guided Aortic Valve Implantation},
  journal = {Biomedical Engineering / Biomedizinische Techink},
  year = {2012},
  url = {http://www.degruyter.com/view/j/bmte.2012.57.issue-s1-I/bmt-2012-4494/bmt-2012-4494.xml},
  doi = {https://doi.org/10.1515/bmt-2012-4494}
}

@article{Buchty2012,
  author = {Buchty, Rainer and Heuveline, Vincent and Karl, Wolfgang and Weiss, Jan-Philipp},
  title = {A survey on hardware-aware and heterogeneous computing on multicore processors and accelerators},
  journal = {Concurrency and Computation: Practice and Experience},
  publisher = {John Wiley & Sons, Ltd},
  year = {2012},
  volume = {24},
  number = {7},
  pages = {663--675},
  url = {http://dx.doi.org/10.1002/cpe.1904},
  doi = {http://dx.doi.org/10.1002/cpe.1904}
}

@article{DBLP:journals-procedia-AnztTGDH12,
  author = {Hartwig Anzt and Stanimire Tomov and Mark Gates and Jack Dongarra and Vincent Heuveline},
  title = {Block-asynchronous Multigrid Smoothers for GPU-accelerated Systems},
  journal = {Procedia CS},
  year = {2012},
  volume = {9},
  pages = {7-16},
  doi = {https://doi.org/10.1016/j.procs.2012.04.002}
}

@misc{emcl-preprint-2012-01,
  author = {Janko, Sven and Rocker, Bjoern and Schindewolf, Martin and Heuveline, Vincent and Karl, Wolfgang},
  title = {Software Transactional Memory, OpenMP and Pthread implementations of the Conjugate Gradients Method - a Preliminary Evaluation},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {01},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-01.pdf}
}

@misc{emcl-preprint-2012-02,
  author = {Barz, Dominik~P.~J. and Bockelmann, Hendryk and Heuveline, Vincent},
  title = {Electrokinetic optimization of a micromixer for lab-on-chip applications},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {02},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-02.pdf}
}

@misc{emcl-preprint-2012-03,
  author = {Heuveline, Vincent and Chandramowli, Subramanian},
  title = {The Coffee-table Book of Pseudospectra},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {03},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-03.pdf}
}

@misc{emcl-preprint-2012-04,
  author = {Anzt, Hartwig and Beglarian, Armen and Chilingaryan, Suren and Ferrone, Andrew and Heuveline, Vincent and Kopmann, Andreas},
  title = {A unified Energy Footprint for Simulation Software},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {04},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-04.pdf},
  doi = {https://doi.org/10.1007/s00450-012-0225-1}
}

@misc{emcl-preprint-2012-05,
  author = {Heuveline, Vincent and Ketelaer, Eva and Ronnas, Staffan and Schmidtobreick, Mareike and Wlotzka, Martin},
  title = {Scalability Study of HiFlow3 based on a Fluid Flow Channel Benchmark},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {05},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-05.pdf}
}

@misc{emcl-preprint-2012-06,
  author = {Thomas Henn, Vincent Heuveline, Mathias J. Krause, Sebastian Ritterbusch},
  title = {Aortic Coarctation simulation based on the Lattice Boltzmann method: benchmark results},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {06},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-06.pdf},
  doi = {https://doi.org/10.1007/978-3-642-36961-2_5}
}

@misc{emcl-preprint-2012-07,
  author = {Andreas Helfrich-Schkarbanenko, Vincent Heuveline, Roman Reiner, Sebastian Ritterbusch},
  title = {Bandwidth-Efficient Parallel Visualization for Mobile Devices},
  journal = {EMCL Preprint Series},
  year = {2012},
  number = {07},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2012-07.pdf}
}

@article{ENAHPC2012,
  author = {Anzt, Hartwig and Beglarian, Armen and Chilingaryan, Suren and Ferrrone, Andrew and Heuveline, Vincent and Kopmann, Andreas},
  title = {A unified Energy Footprint for Simulation Software},
  journal = {Computer Science - Research and Development},
  publisher = {Springer Berlin / Heidelberg},
  year = {2012},
  doi = {http://dx.doi.org/10.1007/s00450-012-0225-1}
}

@article{europar,
  author = {Hartwig Anzt and Piotr Luszcek and Jack Dongarra and Vincent Heuveline},
  title = {GPU-Accelerated Asynchronous Error Correction for Mixed Precision Iterative Refinement},
  journal = {Proceedings of Euro-Par 2012},
  year = {2012},
  volume = {LNCS 7484},
  pages = {908--920},
  doi = {https://doi.org/10.1007/978-3-642-32820-6_89}
}

@incollection{fietz:12,
  author = {Fietz, J. and Krause, M. J. and Schulz, C. and Sanders, P. and Heuveline, V.},
  title = {Optimized Hybrid Parallel Lattice Boltzmann Fluid Flow Simulations on Complex Geometries},
  booktitle = {Euro-Par 2012 Parallel Processing},
  publisher = {Springer Berlin / Heidelberg},
  year = {2012},
  doi = {https://doi.org/10.1007/978-3-642-32820-6_81}
}

@article{hahnELSinverse,
  author = {Tobias Hahn and Vincent Heuveline and Jürgen Hubbuch},
  title = {ChromX – A Powerful and User?Friendly Software Package for Modeling Liquid Chromatography Processes},
  journal = {Chemie Ingenieur Technik},
  year = {2012},
  volume = {84(8)},
  doi = {https://doi.org/10.1002/cite.201250071}
}

@incollection{haptoritterbusch,
  author = {Ritterbusch, Sebastian and Constantinescu, Angela and Koch, Volker},
  title = {Hapto-acoustic Scene Representation},
  booktitle = {Computers Helping People with Special Needs},
  publisher = {Springer Berlin Heidelberg},
  year = {2012},
  volume = {7383},
  pages = {644-650},
  url = {http://dx.doi.org/10.1007/978-3-642-31534-3_94},
  doi = {http://dx.doi.org/10.1007/978-3-642-31534-3_94}
}

@inproceedings{hcw,
  author = {Hartwig Anzt and Stanimire Tomov and Jack Dongarra and Vincent Heuveline},
  title = {A Block-Asynchronous Relaxation Method for Graphics Processing Units},
  booktitle = {IPDPS Workshops},
  year = {2012},
  doi = {https://doi.org/10.1109/ipdpsw.2012.11}
}

@inproceedings{heteropar,
  author = {Anzt, Hartwig and Tomov, Stanimire and Dongarra, Jack and Heuveline, Vincent},
  title = {Weighted Block-Asynchronous Iteration on GPU-Accelerated Systems},
  booktitle = {Euro-Par Parallel Processing Workshops - HeteroPar},
  year = {2012},
  doi = {https://doi.org/10.1007/978-3-642-36949-0_17}
}

@incollection{hiflowtools,
  author = {Anzt, H. and Augustin, W. and Baumann, M. and Gengenbach, T. and Hahn, T. and Helfrich-Schkarbanenko, A. and Heuveline, V. and Ketelaer, E. and Lukarski, D. and Nestler, A. and Ritterbusch, S. and Ronnas, S. and Schick, M. and Schmidtobreick, M. and Subramanian, C. and Weiss, J.-P. and Wilhelm, F. and Wlotzka, M.},
  title = {HiFlow3: A Hardware-Aware Parallel Finite Element Package},
  booktitle = {Tools for High Performance Computing 2011},
  publisher = {Springer Berlin Heidelberg},
  year = {2012},
  pages = {139-151},
  url = {http://dx.doi.org/10.1007/978-3-642-31476-6_12},
  doi = {http://dx.doi.org/10.1007/978-3-642-31476-6_12}
}

@inproceedings{INFOCOMP2012,
  author = {Helfrich-Schkarbanenko, Andreas and Heuveline, Vincent and Reiner, Roman and Ritterbusch, Sebastian},
  title = {Bandwidth-Efficient Parallel Visualization for Mobile Devices},
  booktitle = {The Second International Conference on Advanced Communications and Computation},
  publisher = {IARIA},
  year = {2012},
  pages = {106-112}
}

@article{krause:12a,
  author = {Krause, M.J. and Gudrun Thäter and Heuveline, V.},
  title = {Adjoint-based Fluid Flow Control and Optimisation with Lattice Boltzmann Methods},
  journal = {Computers & Mathematics with Applications},
  year = {2012},
  doi = {https://doi.org/10.1016/j.camwa.2012.08.007}
}

@article{krause:12b,
  author = {Krause, M.J. and Heuveline, V.},
  title = {Parallel Fluid Flow Control and Optimisation with Lattice Boltzmann Methods and Automatic Differentiation},
  journal = {Computers and Fluids},
  year = {2012},
  doi = {https://doi.org/10.1016/j.compfluid.2012.07.026}
}

@phdthesis{Lukarski2012,
  author = {Lukarski, Dimitar},
  title = {Parallel Sparse Linear Algebra for Multi-core and Many-core Platforms -- Parallel Solvers and Preconditioners},
  school = {Karlsruhe Institute of Technology},
  year = {2012},
  url = {http://digbib.ubka.uni-karlsruhe.de/volltexte/1000026568}
}

@incollection{Ronnas2011,
  author = {Ronnas, Staffan and Gengenbach, Thomas and Ketelaer, Eva and Heuveline, Vincent},
  title = {Design and Implementation of Distributed Meshes in HiFlow3},
  booktitle = {Competence in High Performance Computing 2010},
  publisher = {Springer Berlin Heidelberg},
  year = {2012},
  pages = {61-71},
  note = {10.1007/978-3-642-24025-6_6},
  url = {http://dx.doi.org/10.1007/978-3-642-24025-6_6}
}

@phdthesis{SWB-362199361,
  author = {Wilhelm, Florian},
  title = {Parallel Preconditioners for an Ocean Model in Climate Simulations},
  school = {Engineering Mathematics and Computing Lab (EMCL) -- Karlsruhe Institute of Technology (KIT)},
  year = {2012},
  url = {http://digbib.ubka.uni-karlsruhe.de/volltexte/1000027114}
}

@incollection{Trost2011,
  author = {Heuveline, Vincent and Lukarski, Dimitar and Trost, Nico and Weiss, Jan-Philipp},
  title = {Parallel Smoothers for Matrix-based Multigrid Methods on Locally Refined Meshes Using Multicore CPUs and GPUs},
  booktitle = {Facing the Multicore-Challenge II},
  publisher = {Springer},
  year = {2012},
  volume = {7174},
  pages = {158--171}
}

@misc{AnQuHe_PMP11,
  author = {Anzt, Hartwig and Aliaga, José and Castillo, Maribel and Fernández, Juan C. and Heuveline, Vincent and Mayo, Rafael and Quintana-Ort, Enrique S.},
  title = {Analysis and Optimization of Power Consumption in the Iterative Solution of Sparse Linear Systems on Multi-core and Many-core Platforms},
  journal = {Proceedings of The First International Workshop on Power Measurement and Profiling, PMP 2011},
  year = {2011},
  doi = {https://doi.org/10.1109/igcc.2011.6008594}
}

@inproceedings{Augustin2011,
  author = {Augustin, W. and Heuveline, V. and Weiss, J.-P.},
  title = {Convey HC-1 Hybrid Core Computer – The Potential of FPGAs in Numerical Simulation},
  booktitle = {2nd Int. Workshop on New Frontiers in High-performance and Hardware-aware Computing (HipHaC’11)},
  publisher = {KIT Scientific Publishing},
  year = {2011},
  pages = {1--8}
}

@phdthesis{bjoern-rocker,
  author = {Rocker, B.},
  title = {Hardware-aware Solvers for Large, Sparse Linear Systems - Parallel and Multi-precision Approaches},
  school = {Engineering Mathematics and Computing Lab (EMCL) -- Karlsruhe Institute of Technology (KIT)},
  year = {2011}
}

@incollection{CarCulture2011,
  author = {Heuveline, Vincent and Gierth, Wolf-Dietrich and Hauenstein, Thomas and Helfrich-Schkarbanenko, Andreas and Ritterbusch, Sebastian and Schilling, Veronica and Watzke, Michael and Wlotzka, Martin},
  title = {Virtueller Flug durch Karlsruhe},
  booktitle = {Car Culture: Medien der Mobilität},
  publisher = {ZKM Zentrum für Kunst und Medientechnologie Karlsruhe},
  year = {2011}
}

@inproceedings{COMSOL2011,
  author = {Helfrich-Schkarbanenko, Andreas and Mitschele, Marc and Ritterbusch, Sebastian and Heuveline, Vincent},
  title = {Linking the Dimensions},
  booktitle = {Proceedings of the 2011 COMSOL Conference in Stuttgart},
  publisher = {COMSOL},
  year = {2011},
  url = {http://www.comsol.de/cd/direct/conf/mechspotlight/papers/11824/index.html}
}

@inproceedings{DBLP:conf-ipps-AnztHRCFMQ11,
  author = {Hartwig Anzt and Vincent Heuveline and Björn Rocker and Maribel Castillo and Juan C. Fernández and Rafael Mayo and Enrique S. Quintana-Ort},
  title = {Power Consumption of Mixed Precision in the Iterative Solution of Sparse Linear Systems},
  booktitle = {IPDPS Workshops},
  year = {2011},
  pages = {829-836}
}

@misc{emcl-preprint-2011-01,
  author = {Anzt, H. and Castillo, M. and Fernández, J. C. and Heuveline, V. and Mayo, R. and Quintana-Ort, E. S. and Rocker, B.},
  title = {Power Consumption of Mixed Precision in the Iterative Solution of Sparse Linear Systems},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {01},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-01.pdf},
  doi = {https://doi.org/10.1007/978-3-642-38718-0_30}
}

@misc{emcl-preprint-2011-02,
  author = {Adamidis, Panagiotis and Heuveline, Vincent and Wilhelm, Florian},
  title = {A High-Efficient Scalable Solver for the Global Ocean/Sea-Ice Model MPIOM},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {02},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-02.pdf}
}

@misc{emcl-preprint-2011-03,
  author = {Heuveline, Vincent and Schick, Michael},
  title = {Towards a hybrid numerical method using Generalized Polynomial Chaos for Stochastic Differential Equations},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {03},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-03.pdf}
}

@misc{emcl-preprint-2011-04,
  author = {Heuveline, Vincent and Schick, Michael},
  title = {A local time--dependent Generalized Polynomial Chaos method for stochastic dynamical systems},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {04},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-04.pdf}
}

@misc{emcl-preprint-2011-05,
  author = {Anzt, Hartwig and Aliaga, José and Castillo, Maribel and Fernández, Juan C. and Heuveline, Vincent and Mayo, Rafael and Quintana-Ort, Enrique S.},
  title = {Analysis and Optimization of Power Consumption in the Iterative Solution of Sparse Linear Systems on Multi-core and Many-core Platforms},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {05},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-05.pdf},
  doi = {https://doi.org/10.1109/igcc.2011.6008594}
}

@misc{emcl-preprint-2011-06,
  author = {Anzt, Hartwig and Castillo, Maribel and Fernández, Juan C. and Heuveline, Vincent and Igual, Francisco D. and Mayo, Rafael and Quintana-Ort, Enrique S.},
  title = {Optimization of Power Consumption in the Iterative Solution of Sparse Linear Systems on Graphics Processors},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {06},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-06.pdf},
  doi = {https://doi.org/10.1007/s00450-011-0195-8}
}

@misc{emcl-preprint-2011-07,
  author = {Gengenbach, Thomas and Heuveline, Vincent and Krause, Mathias J. and Mayer, Rolf and Zimny, Simon},
  title = {A Preprocessing Approach for Innovative Patient-specific Intranasal Flow Simulations},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {07},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-07.pdf}
}

@misc{emcl-preprint-2011-08,
  author = {Heuveline, Vincent and Lukarski, Dimitar and Weiss, Jan-Philipp},
  title = {Enhanced Parallel ILU(p)-based Preconditioners for Multi-core CPUs and GPUs -- The Power(q)-pattern Method},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {08},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-08.pdf}
}

@misc{emcl-preprint-2011-09,
  author = {Heuveline, Vincent and Lukarski, Dimitar and Trost, Nico and Weiss, Jan-Philipp},
  title = {Parallel Smoothers for Matrix-based Multigrid Methods on Unstructured Meshes Using Multicore CPUs and GPUs},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {09},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-09.pdf}
}

@misc{emcl-preprint-2011-10,
  author = {Heuveline, Vincent and Lukarski, Dimitar and Oboril, F. and Tahoori, Mehdi B. and Weiss, Jan-Philipp},
  title = {Numerical Defect Correction as an Algorithm-Based Fault Tolerance Technique for Iterative Solvers},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {10},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-10.pdf},
  doi = {https://doi.org/10.1109/prdc.2011.26}
}

@misc{emcl-preprint-2011-11,
  author = {Gengenbach, Thomas and Heuveline, Vincent and Krause, Mathias J.},
  title = {Numerical Simulation of the Human Lung: A Two--scale Approach},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {11},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-11.pdf}
}

@misc{emcl-preprint-2011-12,
  author = {Heuveline, Vincent and Thaeter, Gudrun},
  title = {Proceedings of the 4th EMCL-Workshop ''Numerical Simulation, Optimization and High Performance Computing''},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {12},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-12.pdf}
}

@misc{emcl-preprint-2011-13,
  author = {Heuveline, Vincent and Karl, Wolfgang and Nowak, Fabian and Schmidtobreick, Mareike and Wilhelm, Florian},
  title = {Employing a High-Level Language for Porting Numerical Applications to Reconfigurable Hardware},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {13},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-13.pdf}
}

@misc{emcl-preprint-2011-14,
  author = {Anzt, Hartwig and Dongarra, Jack and Heuveline, Vincent and Tomov, Stanimire},
  title = {A Block-Asynchronous Relaxation Method for Graphics Processing Units},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {14},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-14.pdf},
  doi = {https://doi.org/10.1109/ipdpsw.2012.11}
}

@misc{emcl-preprint-2011-15,
  author = {Anzt, Hartwig and Dongarra, Jack and Gates, Mark and Tomov, Stanimire},
  title = {Block-asynchronous multigrid smoothers for GPU-accelerated systems},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {15},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-15.pdf},
  doi = {https://doi.org/10.1016/j.procs.2012.04.002}
}

@misc{emcl-preprint-2011-16,
  author = {Heuveline, Vincent and Ritterbusch, Sebastian and Ronnas, Staffan},
  title = {Augmented Reality for Urban Simulation Visualization},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {16},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-16.pdf}
}

@misc{emcl-preprint-2011-17,
  author = {Anzt, Hartwig and Dongarra, Jack and Heuveline, Vincent and Luszczek, Piotr},
  title = {GPU-Accelerated Asynchronous Error Correction for Mixed Precision Iterative Refinement},
  journal = {EMCL Preprint Series},
  year = {2011},
  number = {17},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2011-17.pdf},
  doi = {https://doi.org/10.2172/1173289}
}

@article{ENAHPC2011,
  author = {Anzt, Hartwig and Castillo, Maribel and Fernández, Juan and Heuveline, Vincent and Igual, Francisco and Mayo, Rafael and Quintana-Ortí, Enrique S.},
  title = {Optimization of power consumption in the iterative solution of sparse linear systems on graphics processors},
  journal = {Computer Science - Research and Development},
  publisher = {Springer Berlin / Heidelberg},
  year = {2011},
  pages = {1-9},
  note = {10.1007/s00450-011-0195-8},
  url = {http://dx.doi.org/10.1007/s00450-011-0195-8},
  doi = {https://doi.org/10.1007/s00450-011-0195-8}
}

@inproceedings{HiFlow3OSCIC2011,
  author = {Anzt, Hartwig and Augustin, Werner and Baumann, Martin and Gengenbach, Thomas and Hahn, Tobias and Helfrich-Schkarbanenko, Andreas and Heuveline, Vincent and Ketelaer, Eva and Lukarski, Dimitar and Nestler, Andrea and Ritterbusch, Sebastian and Rocker, Bjoern and Ronnås, Staffan and Schick, Michael and Schmidtobreick, Mareieke and Subramanian, Chandramowli and Weiss, Jan-Philipp and Wilhelm, Florian and Wlotzka, Martin},
  title = {HiFlow3 – A Multi-Purpose and Flexible Parallel Finite Element Package},
  booktitle = {Open Source CFD International Conference},
  year = {2011},
  pages = {1-15},
  note = {OSCIC 2011 Open Source CFD International Conference in Paris Chantilly}
}

@inproceedings{hiphac11_anzt_hahn_heuveline_rocker,
  author = {Anzt, Hartwig and Hahn, Tobias and Heuveline, Vincent and Rocker, Björn},
  title = {GPU Accelerated Scientific Computing: Evaluation of the NVIDIA Fermi Architecture; Elementary Kernels and Linear Solvers},
  booktitle = {Proceedings of HipHaC 2011},
  year = {2011}
}

@inproceedings{hppac,
  author = {Hartwig Anzt and Vincent Heuveline and Björn Rocker and Maribel Castillo and Juan C. Fernández and Rafael Mayo and Enrique S. Quintana-Ortí},
  title = {Power Consumption of Mixed Precision in the Iterative Solution of Sparse Linear Systems},
  booktitle = {IPDPS Workshops},
  year = {2011},
  pages = {829-836},
  doi = {http://dx.doi.org/10.1109/IPDPS.2011.226}
}

@inproceedings{INFOCOMP2011,
  author = {Heuveline, Vincent and Ritterbusch, Sebastian and Ronnas, Staffan},
  title = {Augmented Reality for Urban Simulation Visualization},
  booktitle = {The First International Conference on Advanced Communications and Computation},
  publisher = {IARIA},
  year = {2011},
  pages = {115-119}
}

@conference{kochritterbuschaugmented,
  author = {Koch, Volker and Ritterbusch, Sebastian and Kopmann, Andreas and Mueller, Marius and Habel, Thorsten and von Both, Petra},
  title = {Flying Augmented Reality: Supporting planning and simulation analysis by combining mixed reality methods using multicopter and pattern recognition},
  booktitle = {29th eCAADe Conference Proceedings},
  year = {2011},
  pages = {843--849},
  note = {ISBN 978-9-4912070-1-3},
  doi = {https://doi.org/10.52842/conf.ecaade.2011.843}
}

@inproceedings{krause:08,
  author = {Heuveline, V. and Krause, M.J.},
  title = {OpenLB: Towards an Efficient Parallel Open Source Library for Lattice Boltzmann Fluid Flow Simulations},
  booktitle = {PARA'08 Workshop on State-of-the-Art in Scientific and Parallel Computing, May 13-16, 2008},
  year = {2011},
  number = {6126, 6127},
  note = {2008}
}

@incollection{krause:10a,
  author = {Krause, M. J. and Gengenbach, T. and Heuveline, V.},
  title = {Hybrid Parallel Simulations of Fluid Flows in Complex Geometries: Application to the Human Lungs},
  booktitle = {Euro-Par 2010 Parallel Processing Workshops},
  publisher = {Springer Berlin / Heidelberg},
  year = {2011},
  volume = {6586},
  pages = {209-216},
  url = {http://dx.doi.org/10.1007/978-3-642-21878-1_26},
  doi = {https://doi.org/10.1007/978-3-642-21878-1_26}
}

@article{krause:11a,
  author = {Mathias J. Krause and Thomas Gengenbach and Simon Zimny and Rolf Mayer and Vincent Heuveline},
  title = {How to Breathe Life into CT-Data},
  journal = {Computer Aided Medical Engineering},
  year = {2011},
  number = {4},
  pages = {29--33}
}

@inproceedings{Lukarski2011b,
  author = {Heuveline, V. and Lukarski, D. and Subramanian, C. and Weiss, J.-P.},
  title = {Parallel Preconditioning and Modular Finite Element Solvers on Hybrid CPU-GPU Systems},
  booktitle = {Proceedings of the Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering},
  publisher = {Civil-Comp Press},
  year = {2011},
  number = {36}
}

@incollection{Lukarski2011c,
  author = {Heuveline, V. and Lukarski, D., and Weiss, J.-P.},
  title = {Scalable Multi-Coloring Preconditioning for Multicore CPUs and GPUs},
  booktitle = {Euro-Par 2010 Parallel Processing Workshops},
  publisher = {Springer Berlin / Heidelberg},
  year = {2011},
  volume = {6586},
  pages = {389--397},
  doi = {https://doi.org/10.1007/978-3-642-21878-1_48}
}

@proceedings{MPIOMwilhelm,
  author = {Adamidis, Panagiotis and Heuveline, Vincent and Wilhelm, Florian},
  title = {An Efficient Scalable Solver for the Global Ocean Sea-Ice Model MPIOM},
  journal = {Proceedings of the Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering},
  publisher = {Civil-Comp Press},
  year = {2011},
  doi = {http://dx.doi.org/10.4203/ccp.95.58}
}

@article{Oboril2011,
  author = {Fabian Oboril and Mehdi B. Tahoori and Vincent Heuveline and Dimitar Lukarski and Jan-Philipp Weiss},
  title = {Numerical Defect Correction as an Algorithm-Based Fault Tolerance Technique for Iterative Solvers},
  journal = {Pacific Rim International Symposium on Dependable Computing, IEEE},
  publisher = {IEEE Computer Society},
  year = {2011},
  volume = {0},
  pages = {144--153},
  doi = {http://doi.ieeecomputersociety.org/10.1109/PRDC.2011.26}
}

@inproceedings{pmp,
  author = {Anzt, Hartwig and Heuveline, Vincent and Aliaga, José I. and Castillo, Maribel and Fernandez, Juan C. and Mayo, Rafael and Quintana-Orti, Enrique S.},
  title = {Analysis and optimization of power consumption in the iterative solution of sparse linear systems on multi-core and many-core platforms},
  booktitle = {Green Computing Conference and Workshops (IGCC), 2011 International},
  year = {2011},
  pages = {1--6},
  doi = {http://dx.doi.org/10.1109/IGCC.2011.6008594}
}

@inproceedings{springerlink:10.1007--978-3-642-19328-6_36,
  author = {Rocker, Björn and Kolberg, Mariana and Heuveline, Vincent},
  title = {The Impact of Data Distribution in Accuracy and Performance of Parallel Linear Algebra Subroutines},
  booktitle = {High Performance Computing for Computational Science – VECPAR 2010},
  publisher = {Springer Berlin / Heidelberg},
  year = {2011},
  volume = {6449},
  pages = {394-407},
  note = {10.1007/978-3-642-19328-6_36},
  url = {http://dx.doi.org/10.1007/978-3-642-19328-6_36},
  doi = {https://doi.org/10.1007/978-3-642-19328-6_36}
}

@article{springerlink:10.1007--s12398-011-0067-8,
  author = {Schönfelder, Martin and Eßer-Frey, Anke and Schick, Michael and Fichtner, Wolf and Heuveline, Vincent and Leibfried, Thomas},
  title = {New Developments in Modeling Network Constraints in Techno-economic Energy System Expansion Planning Models},
  journal = {Zeitschrift für Energiewirtschaft},
  publisher = {Vieweg Verlag},
  year = {2011},
  pages = {1-9},
  note = {10.1007/s12398-011-0067-8},
  url = {http://dx.doi.org/10.1007/s12398-011-0067-8},
  doi = {https://doi.org/10.1007/s12398-011-0067-8}
}

@article{Subramanian20112818,
  author = {C. Subramanian and S. Van Criekingen and V. Heuveline and F. Nataf and P. Havé},
  title = {The Davidson method as an alternative to power iterations for criticality calculations},
  journal = {Annals of Nuclear Energy},
  year = {2011},
  volume = {38},
  number = {12},
  pages = {2818 - 2823},
  url = {http://www.sciencedirect.com/science/article/pii/S0306454911003471},
  doi = {http://dx.doi.org/10.1016/j.anucene.2011.08.018}
}

@inproceedings{vecpar,
  author = {Anzt, Hartwig and Heuveline, Vincent and Rocker, Björn},
  title = {An Error Correction Solver for Linear Systems: Evaluation of Mixed Precision Implementations},
  booktitle = {High Performance Computing for Computational Science -- VECPAR 2010},
  publisher = {Springer Berlin / Heidelberg},
  year = {2011},
  volume = {6449},
  pages = {58-70},
  doi = {http://dx.doi.org/10.1007/978-3-642-19328-6$\_$8}
}

@inproceedings{Anzt2010,
  author = {Anzt, Hartwig and Heuveline Vincent and Rocker, Björn},
  title = {Mixed precision error correction methods for linear systems Convergence analysis based on Krylov subspace methods},
  booktitle = {PARA 2010, Part II, LNCS 7134},
  publisher = {Springer, Heidelberg},
  year = {2010},
  pages = {237--248}
}

@misc{emcl-preprint-2010-01,
  author = {Anzt, Hartwig and Rocker, Björn and Heuveline, Vincent},
  title = {An Error Correction Solver for Linear Systems: Evaluation of Mixed Precision Implementations},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {01},
  url = {http://www.emcl.kit.edu/preprints/emcl-preprint-2010-01.pdf},
  doi = {https://doi.org/10.1007/978-3-642-19328-6_8}
}

@misc{emcl-preprint-2010-02,
  author = {Anzt, Hartwig and Rocker, Björn and Heuveline, Vincent},
  title = {Mixed Precision Error Correction Methods for Linear Systems: Convergence Analysis based on Krylov Subspace Methods},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {02},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2010-02.pdf}
}

@misc{emcl-preprint-2010-03,
  author = {Anzt, Hartwig and Rocker, Björn and Heuveline, Vincent},
  title = {Energy Efficiency of Mixed Precision Iterative Refinement Methods using Hybrid Hardware Platforms: An Evaluation of different Solver and Hardware Configurations},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {03},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2010-03.pdf},
  doi = {https://doi.org/10.1007/s00450-010-0124-2}
}

@misc{emcl-preprint-2010-04,
  author = {Anzt, Hartwig and Hahn, Tobias and Heuveline, Vincent and Rocker, Björn},
  title = {GPU Accelerated Scientific Computing: Evaluation of the NVIDIA Fermi Architecture; Elementary Kernels and Linear Solvers},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {04},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2010-04.pdf}
}

@misc{emcl-preprint-2010-05,
  author = {Baumann, Martin and Heuveline, Vincent},
  title = {Evaluation of Different Strategies for Goal Oriented Adaptivity in CFD -- Part I: The Stationary Case},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {05}
}

@misc{emcl-preprint-2010-06,
  author = {Anzt, H. and Augustin, W. and Baumann, M. and Bockelmann, H. and Gengenbach, T. and Hahn, T. and Heuveline, V. and Ketelaer, E. and Lukarski, D. and Otzen, A. and Ritterbusch, S. and Rocker, B. and Ronnas, S. and Schick, M. and Subramanian, C. and Weiss, J.-P. and Wilhelm, F.},
  title = {HiFlow3 -- A Flexible and Hardware-Aware Parallel Finite Element Package},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {06},
  note = {06:1-36},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2010-06.pdf}
}

@misc{emcl-preprint-2010-07,
  author = {Augustin, W. and Heuveline, V. and Weiss, J.-P.},
  title = {Convey HC-1 -- The Potential of FPGAs in Numerical Simulation},
  journal = {EMCL Preprint Series},
  year = {2010},
  number = {07},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2010-07.pdf}
}

@article{Heuveline2010,
  author = {Grams, C.M. and Jones, S.C. and Marsham, J.H. and Parker, D.J. and Haywood, J.M. and Heuveline, V.},
  title = {The Atlantic inflow to the Saharan heat low: observations and modelling},
  journal = {Quarterly Journal of the Royal Meteorological Society},
  year = {2010},
  number = {S1},
  pages = {125-140},
  url = {http://dx.doi.org/10.1002/qj.429},
  doi = {http://dx.doi.org/10.1002/qj.429}
}

@inproceedings{Heuveline2010a,
  author = {Heuveline, V. and Subramanian, C. and Lukarski, D. and Weiss, J.-P.},
  title = {A multi-platform linear algebra toolbox for finite element solvers on heterogeneous clusters},
  booktitle = {Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS), 2010 IEEE International Conference on},
  year = {2010},
  pages = {1--6},
  doi = {http://dx.doi.org/10.1109/CLUSTERWKSP.2010.5613084}
}

@inbook{HeuvelineWittwer2010,
  author = {Heuveline, V. and Wittwer, P.},
  title = {Exterior flows at low Reynolds numbers: concepts, solutions, and applications},
  booktitle = {Contemporary Challenges in Mathematical Fluid Mechanics and its Applications - Vol.1},
  year = {2010},
  pages = {77-170},
  doi = {https://doi.org/10.1142/9789814299336_0002}
}

@inproceedings{HiFlow3POOSC2010,
  author = {Anzt, Hartwig and Augustin, Werner and Baumann, Martin and Bockelmann, Hendryk and Gengenbach, Thomas and Hahn, Tobias and Heuveline, Vincent and Ketelaer, Eva and Lukarski, Dimitar and Otzen, Andrea and Ritterbusch, Sebastian and Rocker, Björn and Ronnås, Staffan and Schick, Michael and Subramanian, Chandramowli and Weiss, Jan-Philipp and Wilhelm, Florian},
  title = {Hiflow3 - A Flexible and Hardware-Aware Parallel Finite Element Package},
  booktitle = {Proceedings of the 9th Workshop on Parallel/High-Performance Object-Oriented Scientific Computing},
  publisher = {ACM},
  year = {2010},
  pages = {4:1--4:6},
  url = {http://doi.acm.org/10.1145/2039312.2039316},
  doi = {http://doi.acm.org/10.1145/2039312.2039316}
}

@incollection{ObHeuWei2010,
  author = {Oboril, Fabian and Heuveline, Vincent and Weiss, Jan-Philipp},
  title = {Parallel 3D Multigrid Methods on the STI Cell BE architecture},
  booktitle = {Facing the Multicore-Challenge},
  publisher = {Springer, Heidelberg},
  year = {2010},
  volume = {6310},
  pages = {66--78},
  doi = {https://doi.org/10.1007/978-3-642-16233-6_9}
}

@inproceedings{para2010,
  author = {Anzt, Hartwig and Heuveline, Vincent and Rocker, Björn},
  title = {Mixed precision error correction methods for linear systems Convergence analysis based on Krylov subspace methods},
  booktitle = {PARA 2010, Part II, LNCS 7134},
  publisher = {Springer, Heidelberg},
  year = {2010},
  pages = {237--248},
  doi = {http://dx.doi.org/10.1007/978-3-642-28145-7$\_$24}
}

@article{springerlink:10.1007--s00450-010-0124-2,
  author = {Anzt, Hartwig and Rocker, Björn and Heuveline, Vincent},
  title = {Energy efficiency of mixed precision iterative refinement methods using hybrid hardware platforms},
  journal = {Computer Science - Research and Development},
  publisher = {Springer Berlin / Heidelberg},
  year = {2010},
  volume = {25},
  pages = {141-148},
  note = {10.1007/s00450-010-0124-2},
  url = {http://dx.doi.org/10.1007/s00450-010-0124-2},
  doi = {https://doi.org/10.1007/s00450-010-0124-2}
}

@inproceedings{AugHeuWei,
  author = {Augustin, Werner and Heuveline, Vincent and Weiss, Jan-Philipp},
  title = {Optimized Stencil Computation Using In-Place Calculation on Modern Multicore Systems},
  booktitle = {Proceedings of the 15th International Euro-Par Conference on Parallel Processing},
  publisher = {Springer},
  year = {2009},
  pages = {772--784},
  url = {http://dx.doi.org/10.1007/978-3-642-03869-3_72},
  doi = {http://dx.doi.org/10.1007/978-3-642-03869-3_72}
}

@misc{emcl-preprint-2009-01,
  author = {Heuveline, V. and Rocker, B. and Ronnas, S.},
  title = {Numerical Simulation on the SiCortex Supercomputer Platform: a Preliminary Evaluation},
  journal = {EMCL Preprint Series},
  year = {2009},
  number = {01},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2009-01.pdf}
}

@misc{emcl-preprint-2009-02,
  author = {Buchty, Rainer and Heuveline, Vincent and Karl, Wolfgang and Weiss, Jan-Philipp},
  title = {A Survey on Hardware-aware and Heterogeneous Computing on Multicore Processors and Accelerators},
  journal = {EMCL Preprint Series},
  year = {2009},
  number = {02},
  url = {fileadmin/images/Publications/Preprints/emcl-preprint-2009-02.pdf},
  doi = {https://doi.org/10.1002/cpe.1904}
}

@inproceedings{HahnRockerHeuveline2009,
  author = {Hahn, T. and Heuveline, V. and Rocker, B.},
  title = {GPU-based Simulation of Particulate Flows with CUDA},
  booktitle = {Proceedings of the PARS Workshop 2009},
  publisher = {German Informatics Society},
  year = {2009}
}

@article{HeuLukWei09,
  author = {Heuveline, V. and Lukarski, D. and Weiss, J.-P.},
  title = {Performance of a Stream Processing Model on the Cell BE NUMA Architecture Applied to a 3D Conjugate Gradient Poisson Solver},
  journal = {International Journal of Computational Science},
  year = {2009},
  volume = {3},
  number = {5},
  pages = {473--490}
}

@article{Heuveline2009,
  author = {Heuveline, V. and Strauss, F.},
  title = {Shape optimization towards stability in constrained hydrodynamic systems},
  journal = {Journal of Computational Physics},
  year = {2009},
  volume = {228},
  pages = {938-951}
}

@article{Heuvelineaccepted,
  author = {Heuveline, Vincent and Wittwer, Peter},
  title = {Adaptive boundary conditions for exterior stationary flows in three dimensions},
  journal = {Journal of Mathematical Fluid Mechanics},
  year = {2009},
  volume = {12},
  number = {4},
  pages = {554-575},
  doi = {http://dx.doi.org/10.1007/s00021-009-0302-9}
}

@article{Krause2009,
  author = {Heuveline, V. and Krause, M.J. and Latt, J.},
  title = {Towards a hybrid parallelization of lattice Boltzmann methods},
  journal = {Computers and Mathematics with Applications},
  year = {2009},
  volume = {58},
  pages = {1071-1080},
  url = {http://dx.doi.org/10.1016/j.camwa.2009.04.001},
  doi = {http://dx.doi.org/10.1016/j.camwa.2009.04.001}
}

@inproceedings{RonnasRockers2010,
  author = {Heuveline, V. and Rocker, B. and Ronnas, S.},
  title = {Numerical Simulation on the SiCortex Supercomputer Platform: a Preliminary Evaluation},
  booktitle = {EMCL Preprint Series},
  year = {2009}
}

@article{Strauss2009,
  author = {Strauß, F. and Hoferer, J. and Heuveline, V. and Kasper, G.},
  title = {Scalable Numerical Tools for Flow and Pressure Drop Computation in Fibrous Filter Media},
  journal = {Chemical Engineering & Technology},
  year = {2009},
  volume = {32},
  number = {5},
  pages = {820-825},
  doi = {https://doi.org/10.1002/ceat.200800643}
}

@article{Weiss2009,
  author = {Heuveline, V. and Weiss, J.-P.},
  title = {Lattice Boltzmann methods on the ClearSpeed Advance accelerator board},
  journal = {The European Physical Journal -- Special Topics},
  publisher = {Springer Berlin / Heidelberg},
  year = {2009},
  volume = {171},
  pages = {31--36},
  note = {10.1140/epjst/e2009-01008-8},
  url = {http://dx.doi.org/10.1140/epjst/e2009-01008-8},
  doi = {https://doi.org/10.1140/epjst/e2009-01008-8}
}

@inproceedings{Heuveline2008,
  author = {Heuveline, V. and Lukarski, D. and Weiss, Jan-Philipp},
  title = {RapidMind Stream Processing on the PlayStation~3 for a 3D Chorin-based Navier-Stokes Solver},
  booktitle = {HipHaC'08: Proc. 1st Int. Workshop on New Frontiers in High-performance and Hardware-aware Computing},
  publisher = {Universitätsverlag Karlsruhe},
  year = {2008},
  pages = {31-38}
}

@incollection{Heuveline2008c,
  author = {Weygand, D. and Senger, J. and Motz, C. and Augustin, W. and Heuveline, V. and Gumbsch, P.},
  title = {High Performance computing and discrete dislocation dynamics: Plasticity of micrometer sized specimens},
  booktitle = {High Performance Computing in Science and Engineering '08},
  publisher = {Springer-Verlag, Berlin, Germany},
  year = {2008},
  pages = {507-523}
}

@article{Janardhanan2008,
  author = {Janardhanan, V.M. and Heuveline, V. and Deutschmann, O.},
  title = {Three-phase Boundary Lenght in Solid-Oxide Fuel Cells: A mathematical Model},
  journal = {J. Power Sources},
  year = {2008},
  volume = {178},
  pages = {368-372},
  doi = {https://doi.org/10.1016/j.jpowsour.2007.11.083}
}

@inproceedings{Karl2008,
  author = {Karl, M. and Seemann, G. and Sachse, F.B. and Dössel, O and Heuveline, V.},
  title = {Time and Memory Efficient Implementation of the Cardiac Bidomain Equations},
  booktitle = {4th European Conference of the International Federation for Medical and Biological Engineering},
  year = {2008},
  doi = {https://doi.org/10.1007/978-3-540-89208-3_610}
}

@inproceedings{Ruger2008,
  author = {Rüger, B. and Carraro, T. and Joos, J. and Heuveline, V. and Ivers-Tiffée, E.},
  title = {A Numerical Method for the Optimization of MIEC Cathode Microstructures},
  booktitle = {Proceedings of the 8th European Solid Oxide Fuel Cell Forum},
  journal = {Proceedings of the 8th European Solid Oxide Fuel Cell Forum},
  year = {2008},
  pages = {A0616}
}

@inproceedings{Seemann2008,
  author = {Seemann, G. and Sachse, F.B. and Karl, M. and Weiss, D.L. and Heuveline, V. and Dössel, O.},
  title = {Framework for modular, flexible and efficient solving the cardiac bidomain equation using PETSc},
  booktitle = {ECMI},
  year = {2008},
  doi = {https://doi.org/10.1007/978-3-642-12110-4_55}
}

@article{Strauss2008,
  author = {Strauss, F. and Heuveline, V. and Schweizer, B.},
  title = {Existence and Approximation Results for Shape Optimization Problems in Rotordynamics},
  journal = {Numerische Mathematik},
  year = {2008},
  volume = {109},
  number = {2},
  pages = {313-332},
  doi = {https://doi.org/10.1007/s00211-008-0138-x}
}

@article{Strauss2008b,
  author = {Strauss, F. and Désidéri, J.-A. and Duvigneau, R. and Heuveline V.},
  title = {Multiobjective optimization in hydrodynamic stability control},
  journal = {INRIA Research Report},
  year = {2008},
  number = {6608}
}

@article{Bonisch2007,
  author = {Bönisch, S. and Heuveline, V.},
  title = {On the Numerical Simulation of the Instationary Free Fall of a Solid in a Fluid. I. The Newtonian Case},
  journal = {Computers & Fluids},
  year = {2007},
  volume = {36 (9)},
  number = {9},
  pages = {1434-1445}
}

@article{Dorfler2007,
  author = {Dörfler, W. and Heuveline, V.},
  title = {Convergence of an Adaptive hp Finite Element Strategy in One Space Dimension},
  journal = {Applied Numerical Mathematics},
  year = {2007},
  volume = {57},
  number = {10},
  pages = {1108-1124},
  doi = {https://doi.org/10.1016/j.apnum.2006.10.003}
}

@incollection{Galdi2007,
  author = {Galdi, G.P. and Heuveline, V.},
  title = {Lift and Sedimentation of Particles in the Flow of a Viscoelastic Liquid in a Channel},
  booktitle = {Free and Moving Boundaries: Analysis, Simulation and Control},
  publisher = {CRC Press},
  year = {2007},
  pages = {65-95},
  doi = {https://doi.org/10.1201/9781420011159.ch4}
}

@article{Heuveline2007,
  author = {Heuveline, V. and Schieweck, F.},
  title = {H1 Interpolation on Quadrilaterals and Hexaedral Meshes with hanging Nodes},
  journal = {Computing},
  year = {2007},
  volume = {80},
  pages = {203-220},
  doi = {https://doi.org/10.1007/s00607-007-0233-3}
}

@article{Heuveline2007a,
  author = {Heuveline, V. and Schieweck, F.},
  title = {On the Inf-Sup Condition for Higher Order Mixed FEM on Meshes with Hanging Nodes},
  journal = {Mathematical Modelling and Numerical Analysis M2AN},
  year = {2007},
  volume = {41},
  number = {1},
  pages = {1-20},
  doi = {https://doi.org/10.1051/m2an:2007005}
}

@article{Janarhanan2007,
  author = {Janarhanan, V.M. and Heuveline, V. and Deutschmann, O.},
  title = {Performance analysis of a SOFC under direct internal reforming conditions},
  journal = {Journal of Power Sources},
  year = {2007},
  volume = {172},
  pages = {296–307},
  doi = {https://doi.org/10.1016/j.jpowsour.2007.07.008}
}

@article{Latt2007,
  author = {Heuveline, V. and Latt, J.},
  title = {The OpenLB Project: An Open Source and Object Oriented Implementation of Lattice Boltzmann Methods},
  journal = {International Journal of Modern Physics C},
  year = {2007},
  volume = {18},
  number = {4},
  pages = {627-634},
  doi = {https://doi.org/10.1142/s0129183107010875}
}

@article{MaLuSta4,
  author = {Marinova, Daniela and Lukarski, Dimitar and Stavroulakis, Georgios},
  title = {Modeling and optimal control for plates with defects},
  journal = {J. Vib. Control},
  year = {2007},
  volume = {13},
  number = {9-10},
  pages = {1343-1353},
  doi = {http://dx.doi.org/10.1177/1077546307077501}
}

@incollection{P21_2007,
  author = {Augustin, W. and Heuveline, V. and Meschkat, G. and Schlünzen, K.H. and Schroeder, G.},
  title = {OpenMP Parallelization of the METRAS meteorology model: Application to the America's Cup},
  booktitle = {High Performance Computing in Science and Engineering '07},
  publisher = {Springer-Verlag, Berlin, Germany},
  year = {2007},
  number = {6},
  pages = {547-559}
}

@incollection{Bonisch2006,
  author = {Bönisch, S. and Heuveline, V.},
  title = {Advanced Flow Visualization with Hivision},
  booktitle = {Reactive Flows, Diffusion and Transport},
  publisher = {Springer, Berlin},
  year = {2006}
}

@article{Bonisch2006a,
  author = {Bönisch, S. and Heuveline, V. and Wittwer, P.},
  title = {Second Order Adaptive Boundary Conditions for Exterior Flow Problems: Non-symmetric Stationary Flows in two Dimensions},
  journal = {Journal of Mathematical Fluid Mechanics},
  year = {2006},
  volume = {8},
  pages = {1-26},
  doi = {https://doi.org/10.1007/s00021-005-0216-0}
}

@incollection{Carraro2006,
  author = {Carraro, T. and Heuveline, V. and Rannacher, R.},
  title = {Determination of Kinetic Parameters in Laminar Flow Reactors. I. Numerical Aspects},
  booktitle = {Reactive Flows, Diffusion and Transport},
  publisher = {Springer},
  year = {2006}
}

@booklet{Heuveline2006,
  author = {Heuveline, V. and Krause, M.J.},
  title = {Biotechnologie und Numerik auf Hochleistungsrechnern: ein zukünftiges Gespann in Baden-Württemberg, Marktstudie für HWW GmbH},
  year = {2006}
}

@article{Heuveline2006a,
  author = {Heuveline, V. and Nam-Dung, H.},
  title = {On Two Numerical Approaches for the Boundary Control Stabilization of Semi-linear Parabolic Systems: A Comparison},
  journal = {International Series of Numerical Mathematics},
  year = {2006},
  volume = {155},
  pages = {25-47},
  doi = {https://doi.org/10.1007/978-3-7643-7721-2_5}
}

@techreport{Heuveline2006b,
  author = {Heuveline, V. and Nam-Dung, H.},
  title = {On Two Numerical Approaches for the Boundary Control Stabilization of Semi-linear Parabolic Systems: A Comparison},
  year = {2006},
  number = {06-02},
  doi = {https://doi.org/10.1007/978-3-7643-7721-2_5}
}

@inproceedings{Heuveline2006c,
  author = {Heuveline, V. and Walther, A.},
  title = {Online Checkpointing for Parallel Adjoint Computation in PDEs: Application to Goal-Oriented Adaptivity and Flow Control},
  booktitle = {Proceedings of Euro-Par 2006},
  publisher = {Springer},
  year = {2006},
  volume = {4128},
  pages = {689-699},
  doi = {https://doi.org/10.1007/11823285_72}
}

@article{Heuveline2006d,
  author = {Heuveline, V. and Rannacher, R.},
  title = {Adaptive FEM for Eigenvalue Problems with Application in Hydrodynamic Stability Analysis},
  journal = {Journal of Numerical Mathematics},
  year = {2006},
  pages = {1-32}
}

@techreport{Strauss2006,
  author = {Strauss, F. and Heuveline, V. and Schweizer, B.},
  title = {Existence and Approximation Results for Shape Optimization Problems in Rotordynamics},
  year = {2006},
  number = {06-06},
  doi = {https://doi.org/10.1007/s00211-008-0138-x}
}

@article{Bonisch2005,
  author = {Bönisch, S. and Heuveline, V. and Wittwer, P.},
  title = {Adaptive Boundary Conditions for Exterior Flow Problems},
  journal = {Journal of Mathematical Fluid Mechanics},
  year = {2005},
  volume = {7},
  number = {1},
  pages = {85-107},
  doi = {https://doi.org/10.1007/s00021-004-0108-8}
}

@article{Dietz2005,
  author = {Dietz, B. and Heine, A. and Heuveline, V. and Richter, A.},
  title = {Test of New Numerical Approach to the Quantization of Billiards},
  journal = {Physical Review E},
  year = {2005},
  volume = {E 71, 02673},
  doi = {https://doi.org/10.1103/physreve.71.026703}
}

@techreport{Dorfler2005,
  author = {Dörfler, W. and Heuveline, V.},
  title = {Convergence of an adaptive hp finite element method},
  year = {2005},
  number = {37}
}

@inbook{Heuveline2005,
  author = {Heuveline, V.},
  title = {A posteriori error estimation and adaptivity for flow problems},
  booktitle = {Lecture Notes for the 9th Spring School on Fluid Mechanics of Roscoff},
  year = {2005},
  pages = {1-49}
}

@article{Heuveline2005a,
  author = {Heuveline, V.},
  title = {Adaptive Finite Elements for the Steady Free Fall of a Body in Newtonian Fluid},
  journal = {Comptes Rendus de l'Académie des Sciences, Mécanique},
  year = {2005},
  volume = {333},
  number = {12},
  pages = {896-909},
  doi = {https://doi.org/10.1016/j.crme.2005.10.004}
}

@techreport{Heuveline2005b,
  author = {Heuveline, V.},
  title = {Optimal Control of Coupled System of PDE},
  year = {2005},
  number = {18}
}

@inproceedings{Heuveline2005c,
  author = {Heuveline, V. and Bönisch, S. and Rannacher, R.},
  title = {On the Numerical Simulation of the Free Fall Problem},
  booktitle = {Modeling, Simulation and Optimization of Complex Processes: Proceedings of the International Conference on High Performance Scientific Computing, Hanoi},
  publisher = {Springer},
  year = {2005},
  pages = {47-57}
}

@article{Paillere2005,
  author = {Paillère, H. and Le Quéré, P. and Weisman, C. and Vierendeels, J. and Dick, E. and Braack, M. and Dabbene, F. and Beccantini, A. and Studer, E. and Kloczko, T. and Corre, C. and Heuveline, V. and Darbandi, M. and Hosseinizadeh, S. F.},
  title = {Modelling of Natural Convection Flows with Large Temperature Differences: A Benchmark Problem for Low Mach Number Solvers. II: Contributions to the June 2004 Conference},
  journal = {Mathematical Modelling and Numerical Analysis},
  year = {2005},
  volume = {39},
  number = {3},
  pages = {617-621}
}

@incollection{Augustin2004,
  author = {Werner Augustin and Michael Haller and Marc-Oliver Straub and Thomas Worsch},
  title = {SKaMPI -- towards version 5},
  booktitle = {High Performance Computing in Science and Engineering '04},
  publisher = {Springer-Verlag, Berlin, Germany},
  year = {2004}
}

@techreport{Bonisch2004,
  author = {Bönisch, S. and Heuveline, V.},
  title = {On the Numerical Simulation of the Free Fall of a Solid in a Fluid. II. The Viscoelastic Case},
  year = {2004},
  number = {2004-32}
}

@techreport{Bonisch2004a,
  author = {Bönisch, S. and Heuveline, V. and Wittwer, P.},
  title = {Second Order Adaptive Boundary Conditions for Exterior Flow Problems: Non-symmetric Stationary Flows in two Dimensions},
  year = {2004},
  number = {2004-10},
  doi = {https://doi.org/10.1007/s00021-005-0216-0}
}

@techreport{Dietz2004,
  author = {Dietz, B. and Heine, A. and Heuveline, V. and Richter, A.},
  title = {Test of New Numerical Approach to the Quantization of Billiards},
  year = {2004},
  number = {2004-08},
  doi = {https://doi.org/10.1103/physreve.71.026703}
}

@techreport{Galdi2004,
  author = {Galdi, G.P. and Heuveline, V.},
  title = {Lift and Sedimentation of Particles in the Flow of a Viscoelastic Liquid in a Channel},
  year = {2004},
  number = {2004-34},
  doi = {https://doi.org/10.1201/9781420011159.ch4}
}

@article{Heuveline2004,
  author = {Heuveline, V.},
  title = {Numerical Methods for Instationary Control Problems},
  journal = {Oberwolfach Reports},
  year = {2004},
  volume = {1},
  pages = {191-217}
}

@article{Heuveline2004a,
  author = {Heuveline, V.},
  title = {Self-Adaptive Methods for PDE},
  journal = {Oberwolfach Reports},
  year = {2004},
  volume = {1},
  pages = {829-872}
}

@techreport{Heuveline2004b,
  author = {Heuveline, V. and Schieweck, F.},
  title = {An Interpolation Operator for H1 Functions on General Quadrilateral and Hexahedral Meshes with Hanging Nodes},
  year = {2004},
  number = {2004-21}
}

@techreport{Bonisch2003,
  author = {Bönisch, S. and Heuveline, V. and Wittwer, P.},
  title = {Adaptive Boundary Conditions for Exterior Flow Problems},
  year = {2003},
  number = {2003-02},
  doi = {https://doi.org/10.1007/s00021-004-0108-8}
}

@article{Heuveline2003,
  author = {Heuveline, V.},
  title = {On Higher-Order Mixed FEM for Low Mach Number Flows: Application to a Natural Convection Benchmark Problem},
  journal = {International Journal for Numerical Methods in Fluids},
  year = {2003},
  volume = {41},
  number = {12},
  pages = {1339-1356},
  doi = {https://doi.org/10.1002/fld.454}
}

@article{Heuveline2003a,
  author = {Heuveline, V.},
  title = {On the Computation of a Very Large Number of Eigenvalues for Selfadjoint Elliptic Operators by Means of Multigrid Methods},
  journal = {Journal of Computational Physics},
  year = {2003},
  volume = {184},
  number = {1},
  pages = {321-337},
  doi = {https://doi.org/10.1016/s0021-9991(02)00043-8}
}

@inproceedings{Heuveline2003c,
  author = {Heuveline, V. and Rannacher, R.},
  title = {Adaptive FEM for eigenvalue problems},
  booktitle = {Numerical mathematics and advanced applications. Proceedings of Enumath 2001, the 4th European conference, Ischia},
  year = {2003},
  pages = {713-722},
  doi = {https://doi.org/10.1007/978-88-470-2089-4_64}
}

@article{Heuveline2003d,
  author = {Heuveline, V. and Rannacher, R.},
  title = {Duality-Based Adaptivity in the hp-Finite Element Method},
  journal = {Journal of Numerical Mathematics},
  year = {2003},
  volume = {11},
  number = {2},
  pages = {95-113},
  doi = {https://doi.org/10.1515/156939503766614126}
}

@incollection{Rannacher2003,
  author = {Rannacher, R. and Heuveline, V.},
  title = {A numerical tool for flow simulation in a Wankel motor},
  booktitle = {Mathematics - Key Technology for the Future. Joint Projects between Universities and Industry},
  publisher = {Springer},
  year = {2003},
  pages = {33-43},
  doi = {https://doi.org/10.1007/978-3-642-55753-8_3}
}

@article{Becker2002,
  author = {Becker, R. and Heuveline, V. and Rannacher, R.},
  title = {An Optimal Control Approach to Adaptivity in Computational Fluid Mechanics},
  journal = {International Journal for Numerical Methods in Fluids},
  year = {2002},
  volume = {40},
  number = {1-2},
  pages = {105-120},
  doi = {https://doi.org/10.1002/fld.269}
}

@other{Heuveline2002,
  author = {Heuveline, V.},
  title = {Finite element approximations of eigenvalue problems for elliptic partial differential operators},
  school = {Universität Heidelberg},
  year = {2002}
}

@inproceedings{Becker2001,
  author = {Becker, R. and Braack, M. and Heuveline, V. and Rannacher, R.},
  title = {Efficient Numerical Methods for the Simulation of Flow Reactors},
  booktitle = {Technical Proceedings of the Fourth International Conference on Modelling and Simulation of Microsystems},
  year = {2001},
  pages = {194-197}
}

@techreport{Heuveline2001,
  author = {Heuveline, V.},
  title = {On Higher-Order Mixed FEM for Low Mach Number Flows: Applications to a Natural Convection Benchmark Problem},
  year = {2001},
  number = {2001-27},
  doi = {https://doi.org/10.1002/fld.454}
}

@techreport{Heuveline2001a,
  author = {Heuveline, V.},
  title = {On the Computation of a Very Large Number of Eigenvalues for Selfadjoint Elliptic Operators by Means of Multigrid Methods},
  year = {2001},
  number = {2001-37},
  doi = {https://doi.org/10.1016/s0021-9991(02)00043-8}
}

@article{Rannacher2001,
  author = {Rannacher, R. and Heuveline, V.},
  title = {A Posteriori Error Control for Finite Element Approximations of Elliptic Eigenvalue Problems},
  journal = {Advances in Computational Mathematics},
  year = {2001},
  volume = {15},
  number = {1-4},
  pages = {107-138}
}

@techreport{Rannacher2001a,
  author = {Rannacher, R. and Heuveline, V.},
  title = {A Posteriori Error Control for Finite Element Approximations of Elliptic Eigenvalue Problems},
  year = {2001},
  number = {2001-08}
}

@article{Heuveline2000,
  author = {Heuveline, V. and Bertsch, C.},
  title = {On Multigrid Methods for the Eigenvalue Computation of Nonselfadjoint Elliptic Operators},
  journal = {East-West Journal of Numerical Mathematics},
  year = {2000},
  volume = {8},
  number = {4},
  pages = {275-297}
}

@techreport{Heuveline2000a,
  author = {Heuveline, V. and Bertsch, C.},
  title = {On Multigrid Methods for the Eigenvalue Computation of Nonselfadjoint Elliptic Operators},
  year = {2000},
  number = {2000-38}
}

@techreport{Heuveline1997,
  author = {Heuveline, V.},
  title = {Polynomial acceleration techniques for large non hermitian eigenvalue problems and pseudospectra},
  year = {1997}
}

@article{Heuveline1997a,
  author = {Heuveline, V. and Philippe, B. and Sadkane, M.},
  title = {Parallel Computation of Spectral Portrait of Large Matrices by Davidson Type Methods},
  journal = {Numerical Algorithms},
  year = {1997},
  volume = {16},
  number = {1},
  pages = {55-75}
}

@article{Heuveline1997b,
  author = {Heuveline, V. and Sadkane, M.},
  title = {Arnoldi-Faber Method for Large non-Hermitian Eigenvalue Problems},
  journal = {Electronic Transactions on Numerical Analysis},
  year = {1997},
  volume = {5},
  pages = {62-76}
}

@article{Heuveline1997c,
  author = {Heuveline, V. and Sadkane, M.},
  title = {Parallel Computation of Polynomials with Minimal Uniform Norm and its Application to Large Eigenproblems},
  journal = {Journal of Computational and Applied Mathematics},
  year = {1997},
  volume = {82},
  number = {1-2},
  pages = {185-198}
}

@article{Heuveline1996,
  author = {Heuveline, V. and Sadkane, M.},
  title = {Chebyshev Acceleration Techniques for Large Complex non-Hermitian Eigenvalue Problems},
  journal = {Reliable Computing},
  year = {1996},
  volume = {2},
  number = {2},
  pages = {111-117},
  doi = {https://doi.org/10.1007/bf02425912}
}

@article{Heuveline1996a,
  author = {Heuveline, V. and Sadkane, M.},
  title = {Parallel Computation of Spectral Portrait of Large Matrices},
  journal = {Lecture Notes in Computer Science},
  year = {1996},
  volume = {1184},
  pages = {398-407},
  doi = {https://doi.org/10.1007/3-540-62095-8_42}
}